RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 A0A1W2PPC4 97 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 H3BRJ5 948 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 PLRG1O43660 514 aaKnown RBP15.47■□□□□ 0.07
LIMS3-201ENST00000437679 CD160O95971 181 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 H2AFZP0C0S5 128 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 HCAR3P49019 387 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 CCNHP51946 323 aaPredicted RBP15.47■□□□□ 0.07
LIMS3-201ENST00000437679 ADKP55263 362 aaKnown RBP15.47■□□□□ 0.07
LIMS3-201ENST00000437679 SNRPD1P62314 119 aaKnown RBP15.47■□□□□ 0.07
LIMS3-201ENST00000437679 AGBL4Q5VU57 503 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 IL27RAQ6UWB1 636 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 LEKR1Q6ZMV7 388 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 RFX8Q6ZV50 586 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 CYP4V2Q6ZWL3 525 aaPredicted RBP15.47■□□□□ 0.07
LIMS3-201ENST00000437679 H2AFVQ71UI9 128 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 ADAT2Q7Z6V5 191 aaKnown RBP15.47■□□□□ 0.07
LIMS3-201ENST00000437679 PLPP6Q8IY26 295 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 NIPA2Q8N8Q9 360 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 ZNF564Q8TBZ8 553 aaPredicted RBP15.47■□□□□ 0.07
LIMS3-201ENST00000437679 BTBD6Q96KE9 485 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 ZWILCHQ9H900 591 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 CTTNBP2NLQ9P2B4 639 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 WASF2Q9Y6W5 498 aa15.47■□□□□ 0.07
LIMS3-201ENST00000437679 A0A1B0GVT2 93 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 ARHGAP42A6NI28 874 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 AKR1B15C9JRZ8 316 aaPredicted RBP15.46■□□□□ 0.07
LIMS3-201ENST00000437679 LEFTY1O75610 366 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 TMCC1O94876 653 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 GSRP00390 522 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 ERCC2P18074 760 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 IL1R2P27930 398 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 ARL4AP40617 200 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 GRIA4P48058 902 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 CSNK1EP49674 416 aaKnown RBP15.46■□□□□ 0.07
LIMS3-201ENST00000437679 RACK1P63244 317 aaKnown RBP15.46■□□□□ 0.07
LIMS3-201ENST00000437679 SERINC3Q13530 473 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 SMTNL2Q2TAL5 461 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 ASTE1Q2TB18 679 aaPredicted RBP15.46■□□□□ 0.07
LIMS3-201ENST00000437679 INO80DQ53TQ3 878 aaPredicted RBP15.46■□□□□ 0.07
LIMS3-201ENST00000437679 KCNT1Q5JUK3 1230 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 PIP5KL1Q5T9C9 394 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 ERN2Q76MJ5 926 aaKnown RBP15.46■□□□□ 0.07
LIMS3-201ENST00000437679 PRPF39Q86UA1 669 aaKnown RBP15.46■□□□□ 0.07
LIMS3-201ENST00000437679 OR2AP1Q8NGE2 309 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 OR2I1PQ8NGU4 316 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 HSPH1Q92598 858 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 ARRDC3Q96B67 414 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 SKA1Q96BD8 255 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 CELF6Q96J87 481 aaKnown RBP15.46■□□□□ 0.07
LIMS3-201ENST00000437679 CCDC42Q96M95 316 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 ORAI3Q9BRQ5 295 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 HDAC8Q9BY41 377 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 ZDHHC6Q9H6R6 413 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 LRRC19Q9H756 370 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 PREBQ9HCU5 417 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 DNAAF2Q9NVR5 837 aaKnown RBP15.46■□□□□ 0.07
LIMS3-201ENST00000437679 UVRAGQ9P2Y5 699 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 SLCO1B1Q9Y6L6 691 aa15.46■□□□□ 0.07
LIMS3-201ENST00000437679 NCOR2Q9Y618 2525 aa15.46■□□□□ 0.06
LIMS3-201ENST00000437679 MED19A0JLT2 244 aaPredicted RBP15.45■□□□□ 0.06
LIMS3-201ENST00000437679 POP4O95707 220 aaKnown RBP15.45■□□□□ 0.06
LIMS3-201ENST00000437679 CER1O95813 267 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 TCF4P15884 667 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 CSRP1P21291 193 aaKnown RBP15.45■□□□□ 0.06
LIMS3-201ENST00000437679 NUDT1P36639 197 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 SSR1P43307 286 aaKnown RBP15.45■□□□□ 0.06
LIMS3-201ENST00000437679 RAD51Q06609 339 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 DPYSL2Q16555 572 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 HADHQ16836 314 aaKnown RBP15.45■□□□□ 0.06
LIMS3-201ENST00000437679 TEKT4Q8WW24 435 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 LRIG1Q96JA1 1093 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 GDAP1L1Q96MZ0 367 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 SLC6A18Q96N87 628 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 CHP1Q99653 195 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 SLC39A8Q9C0K1 460 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 KLC2Q9H0B6 622 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 GAREM1Q9H706 876 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 NHEJ1Q9H9Q4 299 aaPredicted RBP15.45■□□□□ 0.06
LIMS3-201ENST00000437679 AASDHPPTQ9NRN7 309 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.45■□□□□ 0.06
LIMS3-201ENST00000437679 CWC15Q9P013 229 aaKnown RBP15.45■□□□□ 0.06
LIMS3-201ENST00000437679 UBA2Q9UBT2 640 aaPredicted RBP15.45■□□□□ 0.06
LIMS3-201ENST00000437679 LCMT1Q9UIC8 334 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 CABIN1Q9Y6J0 2220 aa15.45■□□□□ 0.06
LIMS3-201ENST00000437679 PLXNA2O75051 1894 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 C10orf142B7Z368 130 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 KRIT1O00522 736 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 LATO43561 262 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 KCNK5O95279 499 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 IGSF6O95976 241 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 TMEM253P0C7T8 217 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 RARAP10276 462 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 ITGB7P26010 798 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 MAT2AP31153 395 aaKnown RBP15.44■□□□□ 0.06
LIMS3-201ENST00000437679 PAPOLAP51003 745 aaKnown RBP15.44■□□□□ 0.06
LIMS3-201ENST00000437679 NOVA1P51513 510 aaKnown RBP15.44■□□□□ 0.06
LIMS3-201ENST00000437679 NEK3P51956 506 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 C21orf59P57076 290 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 TAS2R38P59533 333 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 RHOAP61586 193 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms