RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 C6orf106Q9H6K1 298 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-208ENST00000437607 WDCPQ9H6R7 721 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 TM7SF3Q9NS93 570 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 GPATCH2LQ9NWQ4 482 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 SLC12A6Q9UHW9 1150 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 CDC23Q9UJX2 597 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 FZD10Q9ULW2 581 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 TDRD6O60522 2096 aaKnown RBP12.45□□□□□ -0.42
PTPRF-208ENST00000437607 KALRNO60229 2985 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 A0A1B0GVT2 93 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 SYNCRIPO60506 623 aaKnown RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 CER1O95813 267 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 ATXN1LP0C7T5 689 aaKnown RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 HLA-FP30511 346 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 ACSL1P33121 698 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 ARL4AP40617 200 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 PEX5P50542 639 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 CAMK2GQ13555 558 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 PDK2Q15119 407 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 PPP2R5EQ16537 467 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 DPYSL2Q16555 572 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 ZC3H12AQ5D1E8 599 aaKnown RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 PPP6R3Q5H9R7 873 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 CYP4V2Q6ZWL3 525 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 FAM124AQ86V42 546 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 RCOR2Q8IZ40 523 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 ZNF366Q8N895 744 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 MDM1Q8TC05 714 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 SETD7Q8WTS6 366 aaKnown RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 DDI1Q8WTU0 396 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 COG1Q8WTW3 980 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 RNF25Q96BH1 459 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 FCRL2Q96LA5 508 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 EPAS1Q99814 870 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 ZNF670Q9BS34 389 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 SLC2A11Q9BYW1 496 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 TKTL2Q9H0I9 626 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 TMEM245Q9H330 911 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.44□□□□□ -0.426e-6■■□□□ 12.8
PTPRF-208ENST00000437607 KIAA1522Q9P206 1035 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 RNF14Q9UBS8 474 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 APOBEC2Q9Y235 224 aaKnown RBP12.44□□□□□ -0.42
PTPRF-208ENST00000437607 BTBD3Q9Y2F9 522 aa12.44□□□□□ -0.42
PTPRF-208ENST00000437607 GOLGA6L10A0A0M3HER8 536 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 H3BRJ5 948 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 ZNF185O15231 689 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 TSPAN3O60637 253 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 IGLV3-27P01718 113 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 CYBBP04839 570 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 PTPN7P35236 360 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 HARS2P49590 506 aaKnown RBP12.43□□□□□ -0.42
PTPRF-208ENST00000437607 CSNK1EP49674 416 aaKnown RBP12.43□□□□□ -0.42
PTPRF-208ENST00000437607 SGSHP51688 502 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 ZNF135P52742 658 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-208ENST00000437607 COPS2P61201 443 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 PTPRNQ16849 979 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 ATP13A4Q4VNC1 1196 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 TFDP3Q5H9I0 405 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 MFSD7Q6UXD7 560 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 SERPINA13PQ6UXR4 307 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 SPOCD1Q6ZMY3 1216 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 KIAA0907Q7Z7F0 614 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-208ENST00000437607 ADIPOR2Q86V24 386 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 VSIG1Q86XK7 387 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 MARCH9Q86YJ5 346 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 UNC45BQ8IWX7 931 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 MNS1Q8NEH6 495 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 OR2T3Q8NH03 318 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 WFDC5Q8TCV5 224 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 CYB5D2Q8WUJ1 264 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 MAIP1Q8WWC4 291 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 RAPGEF5Q92565 580 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 SLC39A13Q96H72 371 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 BTN2A3PQ96KV6 586 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 KCTD15Q96SI1 283 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-208ENST00000437607 CCDC86Q9H6F5 360 aaKnown RBP12.43□□□□□ -0.42
PTPRF-208ENST00000437607 PCDH18Q9HCL0 1135 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 ARHGEF38Q9NXL2 777 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 RCOR3Q9P2K3 495 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-208ENST00000437607 STOML2Q9UJZ1 356 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-208ENST00000437607 PCDHGB2Q9Y5G2 931 aa12.43□□□□□ -0.42
PTPRF-208ENST00000437607 ASXL3Q9C0F0 2248 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 hCG_1818297A0A087WSY0 165 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 ZNF487B1APH4 448 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 EEF2KO00418 725 aaKnown RBP12.42□□□□□ -0.42
PTPRF-208ENST00000437607 TIMM44O43615 452 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 FGGP02679 453 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 PYGMP11217 842 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 ACADMP11310 421 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 KDELR1P24390 212 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 ADRA1BP35368 520 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 SLC11A2P49281 568 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 TPI1P60174 286 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 DPYSL3Q14195 570 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 CA9Q16790 459 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 LONRF2Q1L5Z9 754 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 KIF19Q2TAC6 998 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 COL28A1Q2UY09 1125 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms