RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 LSMEM2Q8N112 164 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 KYQ8NBH2 561 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 RDH11Q8TC12 318 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 STYXQ8WUJ0 223 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 MYLPFQ96A32 169 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 CNDP1Q96KN2 507 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 CATSPER2Q96P56 530 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 TRAPPC9Q96Q05 1148 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 CDRT15Q96T59 188 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 PTPN18Q99952 460 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 TBL1YQ9BQ87 522 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 VCX3BQ9H321 246 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 SLC38A7Q9NVC3 462 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 NSMCE4AQ9NXX6 385 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 RRN3Q9NYV6 651 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 XPR1Q9UBH6 696 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 SLC2A6Q9UGQ3 507 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 CDH9Q9ULB4 789 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 ACOT9Q9Y305 439 aa11.98□□□□□ -0.49
CD44-209ENST00000433892 DLX3O60479 287 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 PGK1P00558 417 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 ZNF865P0CJ78 1059 aaPredicted RBP11.97□□□□□ -0.49
CD44-209ENST00000433892 UQCRBP14927 111 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 VCLP18206 1134 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 POLE2P56282 527 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 PRKAA1Q13131 559 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 CYLC2Q14093 348 aaPredicted RBP11.97□□□□□ -0.49
CD44-209ENST00000433892 GRAMD1BQ3KR37 738 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 PCID2Q5JVF3 399 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 LRRC8EQ6NSJ5 796 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 PAXIP1Q6ZW49 1069 aaPredicted RBP11.97□□□□□ -0.49
CD44-209ENST00000433892 SPNS2Q8IVW8 549 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 CCNYL1Q8N7R7 359 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 DQX1Q8TE96 717 aaKnown RBP11.97□□□□□ -0.49
CD44-209ENST00000433892 NXNL1Q96CM4 212 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 RCN3Q96D15 328 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 FICDQ9BVA6 458 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 ATXN3LQ9H3M9 355 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 FAM105AQ9NUU6 356 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 STK39Q9UEW8 545 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 AAR2Q9Y312 384 aaKnown RBP11.97□□□□□ -0.49
CD44-209ENST00000433892 PTCH2Q9Y6C5 1203 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 DOCK3Q8IZD9 2030 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 ARL5CA6NH57 179 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 TMEM233B4DJY2 109 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 TARM1B6A8C7 271 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 AP3B1O00203 1094 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 CFLARO15519 480 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 ARNTP27540 789 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 PPARGP37231 505 aaPredicted RBP11.97□□□□□ -0.49
CD44-209ENST00000433892 CPT1AP50416 773 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 SCNN1GP51170 649 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 THOP1P52888 689 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 PKNOX1P55347 436 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 RAB10P61026 200 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 CNGA3Q16281 694 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 CCL14Q16627 93 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 MMEL1Q495T6 779 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 TIGD5Q53EQ6 642 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 DENND5AQ6IQ26 1287 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 SDCCAG8Q86SQ7 713 aaPredicted RBP11.97□□□□□ -0.49
CD44-209ENST00000433892 ATPAF2Q8N5M1 289 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 RNF148Q8N7C7 305 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 SCAMP5Q8TAC9 235 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 SGF29Q96ES7 293 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 RTP3Q9BQQ7 232 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 ST3GAL5Q9UNP4 418 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 NEU3Q9UQ49 428 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 CDYLQ9Y232 598 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 INPP5FQ9Y2H2 1132 aa11.97□□□□□ -0.49
CD44-209ENST00000433892 FAM95CA0A1B0GW59 222 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 TXNDC9O14530 226 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 CACNG3O60359 315 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 PMPCBO75439 489 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 STMN1P16949 149 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 ARCN1P48444 511 aaKnown RBP11.96□□□□□ -0.49
CD44-209ENST00000433892 ZNF135P52742 658 aaPredicted RBP11.96□□□□□ -0.49
CD44-209ENST00000433892 COG7P83436 770 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 C16orf89Q6UX73 402 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 ARHGAP12Q8IWW6 846 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 RP9Q8TA86 221 aaKnown RBP11.96□□□□□ -0.49
CD44-209ENST00000433892 USP13Q92995 863 aaPredicted RBP11.96□□□□□ -0.49
CD44-209ENST00000433892 GPR78Q96P69 363 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 TSGA13Q96PP4 275 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 PARK7Q99497 189 aaKnown RBP11.96□□□□□ -0.49
CD44-209ENST00000433892 CSNK1G1Q9HCP0 422 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 NDFIP2Q9NV92 336 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 CPA4Q9UI42 421 aa11.96□□□□□ -0.49
CD44-209ENST00000433892 CAPN8A6NHC0 703 aa11.95□□□□□ -0.5
CD44-209ENST00000433892 STX16-NPEPL1H3BU86 382 aa11.95□□□□□ -0.5
CD44-209ENST00000433892 CASQ2O14958 399 aaPredicted RBP11.95□□□□□ -0.5
CD44-209ENST00000433892 PSMD3O43242 534 aa11.95□□□□□ -0.5
CD44-209ENST00000433892 CTSHP09668 335 aa11.95□□□□□ -0.5
CD44-209ENST00000433892 ENO3P13929 434 aaPredicted RBP11.95□□□□□ -0.5
CD44-209ENST00000433892 XRCC1P18887 633 aaPredicted RBP11.95□□□□□ -0.5
CD44-209ENST00000433892 CCNCP24863 283 aa11.95□□□□□ -0.5
CD44-209ENST00000433892 PCSK1P29120 753 aa11.95□□□□□ -0.5
CD44-209ENST00000433892 SLC1A2P43004 574 aa11.95□□□□□ -0.5
CD44-209ENST00000433892 ALDH1A3P47895 512 aa11.95□□□□□ -0.5
CD44-209ENST00000433892 ATXN3P54252 364 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms