RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 AMPD2Q01433 879 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 SMU1Q2TAY7 513 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 PLEKHG4Q58EX7 1191 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 ZNF655Q8N720 491 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-206ENST00000409809 IL17REQ8NFR9 667 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 GANCQ8TET4 914 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 PIH1D2Q8WWB5 315 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 ACTR8Q9H981 624 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 EBF2Q9HAK2 575 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 SPATA7Q9P0W8 599 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 BCKDKO14874 412 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 HMBSP08397 361 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 ETS2P15036 469 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 FAM196AQ6ZSG2 479 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 LPCAT1Q8NF37 534 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 RIT2Q99578 217 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 NPTX2P47972 431 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 ARFIP1P53367 373 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 ECT2LQ008S8 904 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 ZSCAN18Q8TBC5 510 aaPredicted RBP13.02□□□□□ -0.32
COL6A3-206ENST00000409809 ACSS3Q9H6R3 686 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 CYP3A43Q9HB55 503 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 MADDQ8WXG6 1647 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 RB1P06400 928 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 BNIP1Q12981 228 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 SCN4BQ8IWT1 228 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 C7orf26Q96N11 449 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 IRF2BPLQ9H1B7 796 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 LRRC4BQ9NT99 713 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 CUEDC1Q9NWM3 386 aaPredicted RBP13.02□□□□□ -0.32
COL6A3-206ENST00000409809 ZNF232Q9UNY5 417 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 MAB21L2Q9Y586 359 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 NEXMIFQ5QGS0 1516 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 A0A096LPK6 155 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 USP17L3A6NCW0 530 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 USP17L4A6NCW7 530 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 GTF2E2P29084 291 aaKnown RBP13.02□□□□□ -0.32
COL6A3-206ENST00000409809 TUFMP49411 452 aaKnown RBP13.02□□□□□ -0.32
COL6A3-206ENST00000409809 TPTEP56180 551 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 HMBOX1Q6NT76 420 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 USP17L1Q7RTZ2 530 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 SLFN11Q7Z7L1 901 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 LZTR1Q8N653 840 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 DNAJC28Q9NX36 388 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 RCOR3Q9P2K3 495 aaPredicted RBP13.02□□□□□ -0.32
COL6A3-206ENST00000409809 XPR1Q9UBH6 696 aa13.02□□□□□ -0.32
COL6A3-206ENST00000409809 OR2B6P58173 313 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 SPON2Q9BUD6 331 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 PET100P0DJ07 73 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 HOXA13P31271 388 aaPredicted RBP13.02□□□□□ -0.33
COL6A3-206ENST00000409809 RPA3P35244 121 aaPredicted RBP13.02□□□□□ -0.33
COL6A3-206ENST00000409809 GABRB2P47870 512 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 BCAT1P54687 386 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 VPS26BQ4G0F5 336 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 PAGE2BQ5JRK9 111 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 SPOCD1Q6ZMY3 1216 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 OOSP2Q86WS3 158 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 CDH7Q9ULB5 785 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 KANTRA0A1W2PQU2 76 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 DDX3YO15523 660 aaKnown RBP13.02□□□□□ -0.33
COL6A3-206ENST00000409809 AP5Z1O43299 807 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 NPHP4O75161 1426 aaPredicted RBP13.02□□□□□ -0.33
COL6A3-206ENST00000409809 RPLP0P05388 317 aaKnown RBP13.02□□□□□ -0.33
COL6A3-206ENST00000409809 RPL10AP62906 217 aaKnown RBP13.02□□□□□ -0.33
COL6A3-206ENST00000409809 FGD3Q5JSP0 725 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 ZZZ3Q8IYH5 903 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 MID1IP1Q9NPA3 183 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 MYH14Q7Z406 1995 aaKnown RBP13.02□□□□□ -0.33
COL6A3-206ENST00000409809 MYMKA6NI61 221 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 MAZP56270 477 aaKnown RBP13.02□□□□□ -0.33
COL6A3-206ENST00000409809 IFI35P80217 286 aaPredicted RBP13.02□□□□□ -0.33
COL6A3-206ENST00000409809 MPP2Q14168 576 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 DCAF4L1Q3SXM0 396 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 TRIM40Q6P9F5 258 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 CYB5R4Q7L1T6 521 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 NT5DC3Q86UY8 548 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 FAM13CQ8NE31 585 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF607Q96SK3 696 aa13.02□□□□□ -0.33
COL6A3-206ENST00000409809 ZCCHC2Q9C0B9 1178 aaKnown RBP13.02□□□□□ -0.33
COL6A3-206ENST00000409809 PRMT7Q9NVM4 692 aaPredicted RBP13.02□□□□□ -0.33
COL6A3-206ENST00000409809 E7ENX8 843 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 ADAMDEC1O15204 470 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 CST1P01037 141 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 CDC16Q13042 620 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 MYBPC3Q14896 1274 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 MOGQ16653 247 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 TMC7Q7Z402 723 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 POU5F2Q8N7G0 328 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 LRRC19Q9H756 370 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 DDX43Q9NXZ2 648 aaKnown RBP13.01□□□□□ -0.33
COL6A3-206ENST00000409809 SERPINB7O75635 380 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 IFNGP01579 166 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 A1BGP04217 495 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 LRRC69Q6ZNQ3 347 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 DENND5BQ6ZUT9 1274 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 C9orf43Q8TAL5 461 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-206ENST00000409809 DPF3Q92784 378 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 NODALQ96S42 347 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 AP3D1O14617 1153 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 CASKO14936 926 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms