RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 BAIAP3O94812 1187 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 UGT2B4P06133 528 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 HOXD8P13378 290 aaPredicted RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 CPA3P15088 417 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 MSH3P20585 1137 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 ADRA1DP25100 572 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 WASP42768 502 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 NRIP1P48552 1158 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 GDF10P55107 478 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 SLC25A11Q02978 314 aaKnown RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 N4BP2L1Q5TBK1 243 aaPredicted RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 GRTP1Q5TC63 336 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 SCARA3Q6AZY7 606 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 GPRIN1Q7Z2K8 1008 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 METTL3Q86U44 580 aaKnown RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 LRRC34Q8IZ02 419 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 SLC22A17Q8WUG5 538 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 MAGEH1Q9H213 219 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 ASB8Q9H765 288 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 HCSTQ9UBK5 93 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 SMCHD1A6NHR9 2005 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 LRRC37AA6NMS7 1700 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 TEX28O15482 410 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 CCDC22O60826 627 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 SKAP2O75563 359 aaPredicted RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 FGF1P05230 155 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 TFE3P19532 575 aaPredicted RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 HLA-DPA1P20036 260 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 MAPKAPK2P49137 400 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 MLLT6P55198 1093 aaPredicted RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 RAB30Q15771 203 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 PPP1R15BQ5SWA1 713 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 ADGRF1Q5T601 910 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 ANKRD22Q5VYY1 191 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 KIAA1324Q6UXG2 1013 aaKnown RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 GRASPQ7Z6J2 395 aaPredicted RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 ST13P5Q8NFI4 369 aaPredicted RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 HDAC10Q969S8 669 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 ZCWPW1Q9H0M4 648 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 SYNDIG1Q9H7V2 258 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 FBXO6Q9NRD1 293 aaPredicted RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 DUS2Q9NX74 493 aaKnown RBP9.21□□□□□ -0.93
LIG4-202ENST00000405925 CNTN6Q9UQ52 1028 aa9.21□□□□□ -0.93
LIG4-202ENST00000405925 TCRBV9S1A1TA0A576 114 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 ALOX15BO15296 676 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 INPPL1O15357 1258 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 CCNCP24863 283 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 PTPN3P26045 913 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 FMO4P31512 558 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 DDX39BQ13838 428 aaKnown RBP9.21□□□□□ -0.94
LIG4-202ENST00000405925 SETMARQ53H47 684 aaPredicted RBP9.21□□□□□ -0.94
LIG4-202ENST00000405925 RD3Q7Z3Z2 195 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 C12orf50Q8NA57 414 aaPredicted RBP9.21□□□□□ -0.94
LIG4-202ENST00000405925 PRCCQ92733 491 aaPredicted RBP9.21□□□□□ -0.94
LIG4-202ENST00000405925 PHF21BQ96EK2 531 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 OMDQ99983 421 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 TNKS2Q9H2K2 1166 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 CASS4Q9NQ75 786 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 CATSPERZQ9NTU4 200 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 TMLHEQ9NVH6 421 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 PCDHGC4Q9Y5F7 938 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 USH1CQ9Y6N9 552 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 PDZK1P1A8MUH7 402 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 C1QTNF3-AMACRE9PGA6 284 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 GRM6O15303 877 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 RBP1P09455 135 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 EN2P19622 333 aaPredicted RBP9.21□□□□□ -0.94
LIG4-202ENST00000405925 PLK1P53350 603 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 HNRNPH2P55795 449 aaKnown RBP9.21□□□□□ -0.94
LIG4-202ENST00000405925 CTBP1Q13363 440 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 HNRNPDQ14103 355 aaKnown RBP9.21□□□□□ -0.94
LIG4-202ENST00000405925 TBCCQ15814 346 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 PDCD2Q16342 344 aaPredicted RBP9.21□□□□□ -0.94
LIG4-202ENST00000405925 DOK6Q6PKX4 331 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 POTEHQ6S545 545 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 LRRTM3Q86VH5 581 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 TTC9BQ8N6N2 239 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 PPWD1Q96BP3 646 aaKnown RBP9.21□□□□□ -0.94
LIG4-202ENST00000405925 PGM2Q96G03 612 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 PPP1R16AQ96I34 528 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 PEBP4Q96S96 227 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 SRPK1Q96SB4 655 aaKnown RBP9.21□□□□□ -0.94
LIG4-202ENST00000405925 CENPKQ9BS16 269 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 NEUROG2Q9H2A3 272 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 VCXQ9H320 206 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 ACSS3Q9H6R3 686 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 ACTR5Q9H9F9 607 aaPredicted RBP9.21□□□□□ -0.94
LIG4-202ENST00000405925 ZFP14Q9HCL3 533 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 FBXO5Q9UKT4 447 aa9.21□□□□□ -0.94
LIG4-202ENST00000405925 MYH10P35580 1976 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.2□□□□□ -0.94
LIG4-202ENST00000405925 FAM95CA0A1B0GW59 222 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 MATN3O15232 486 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 MYO1DO94832 1006 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 OAZ2O95190 189 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 LPOP22079 712 aaPredicted RBP9.2□□□□□ -0.94
LIG4-202ENST00000405925 CTGFP29279 349 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 CXCR3P49682 368 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 PFKPQ01813 784 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 SULT2A1Q06520 285 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms