RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 V9GYY5 206 aaPredicted RBP18.36■□□□□ 0.53
SDC1-203ENST00000403076 PRUNE2Q8WUY3 3088 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 BNIP3LO60238 219 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 DRD1P21728 446 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 SEC13P55735 322 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 BASP1P80723 227 aaKnown RBP18.35■□□□□ 0.53
SDC1-203ENST00000403076 GUCY2DQ02846 1103 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 PRPSAP1Q14558 356 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 PARP6Q2NL67 630 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 TMEM196Q5HYL7 178 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 RYBPQ8N488 228 aaPredicted RBP18.35■□□□□ 0.53
SDC1-203ENST00000403076 EXOC2Q96KP1 924 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 MRGPRX3Q96LB0 322 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 TM6SF2Q9BZW4 377 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 ARHGEF3Q9NR81 526 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 RAB6BQ9NRW1 208 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 DMGDHQ9UI17 866 aaKnown RBP18.35■□□□□ 0.53
SDC1-203ENST00000403076 ATP8A1Q9Y2Q0 1164 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 F5P12259 2224 aa18.35■□□□□ 0.53
SDC1-203ENST00000403076 SPTBN5Q9NRC6 3674 aaKnown RBP18.35■□□□□ 0.53
SDC1-203ENST00000403076 E7EVH7 732 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 METTL18O95568 372 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 EGFP01133 1207 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 CD72P21854 359 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 PSMB4P28070 264 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 CD68P34810 354 aaPredicted RBP18.34■□□□□ 0.53
SDC1-203ENST00000403076 FDFT1P37268 417 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 RECQLP46063 649 aaPredicted RBP18.34■□□□□ 0.53
SDC1-203ENST00000403076 SCNN1BP51168 640 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 ZNF234Q14588 700 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 PTPRNQ16849 979 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 FAXCQ5TGI0 409 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 EMC10Q5UCC4 262 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 FSTL4Q6MZW2 842 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 C22orf39Q6P5X5 142 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 ZNF852Q6ZMS4 543 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 UBALD2Q8IYN6 164 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 PGBD5Q8N414 524 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 ZNF419Q96HQ0 510 aaPredicted RBP18.34■□□□□ 0.53
SDC1-203ENST00000403076 SEMA3CQ99985 751 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 CEP44Q9C0F1 390 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 GBA3Q9H227 469 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 TNKS2Q9H2K2 1166 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 EPB41L5Q9HCM4 733 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 LHX3Q9UBR4 397 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 WNT16Q9UBV4 365 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 NDRG2Q9UN36 371 aaKnown RBP18.34■□□□□ 0.53
SDC1-203ENST00000403076 SNX24Q9Y343 169 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 KIAA1549LQ6ZVL6 1849 aa18.34■□□□□ 0.53
SDC1-203ENST00000403076 TTC24A2A3L6 582 aaPredicted RBP18.33■□□□□ 0.53
SDC1-203ENST00000403076 TTC34A8MYJ7 566 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 K7EQS6 105 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 MUSKO15146 869 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 ATP9BO43861 1147 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 IGSF6O95976 241 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 COL4A2P08572 1712 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 LMAN1P49257 510 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 SNRPD1P62314 119 aaKnown RBP18.33■□□□□ 0.53
SDC1-203ENST00000403076 DSC2Q02487 901 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 PRKCQQ04759 706 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 DGKKQ5KSL6 1271 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 ATXN7L2Q5T6C5 722 aaPredicted RBP18.33■□□□□ 0.53
SDC1-203ENST00000403076 EGFLAMQ63HQ2 1017 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 SERPINA13PQ6UXR4 307 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 PCDH20Q8N6Y1 951 aaKnown RBP18.33■□□□□ 0.53
SDC1-203ENST00000403076 ZNF513Q8N8E2 541 aaPredicted RBP18.33■□□□□ 0.53
SDC1-203ENST00000403076 ISG20Q96AZ6 181 aaKnown RBP18.33■□□□□ 0.53
SDC1-203ENST00000403076 SHDQ96IW2 340 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 MGME1Q9BQP7 344 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 SLC25A51Q9H1U9 297 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 ETNK1Q9HBU6 452 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 SCUBE2Q9NQ36 999 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 THAP10Q9P2Z0 257 aaPredicted RBP18.33■□□□□ 0.53
SDC1-203ENST00000403076 MUTYHQ9UIF7 546 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 STARD13Q9Y3M8 1113 aa18.33■□□□□ 0.53
SDC1-203ENST00000403076 GOLGA6CA6NDK9 693 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 GOLGA6BA6NDN3 693 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 GOLGA6DP0CG33 693 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 CES1P23141 567 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 TIE1P35590 1138 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 RGRP47804 291 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 VASPP50552 380 aaPredicted RBP18.33■□□□□ 0.52
SDC1-203ENST00000403076 NSUN2Q08J23 767 aaKnown RBP eCLIP18.33■□□□□ 0.52
SDC1-203ENST00000403076 ERCC6LQ2NKX8 1250 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 DUPD1Q68J44 220 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 ZNF366Q8N895 744 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 KDM1BQ8NB78 822 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 SNF8Q96H20 258 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 GDAP1L1Q96MZ0 367 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 NECAB3Q96P71 396 aaPredicted RBP18.33■□□□□ 0.52
SDC1-203ENST00000403076 FCRL5Q96RD9 977 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 ZDHHC4Q9NPG8 344 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 GOLGA6AQ9NYA3 693 aa18.33■□□□□ 0.52
SDC1-203ENST00000403076 MRPS17Q9Y2R5 130 aaKnown RBP18.33■□□□□ 0.52
SDC1-203ENST00000403076 MYO18AQ92614 2054 aaKnown RBP18.32■□□□□ 0.52
SDC1-203ENST00000403076 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.32■□□□□ 0.52
SDC1-203ENST00000403076 ANXA9O76027 345 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 HLA-EP13747 358 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 CD86P42081 329 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 NIPAL4Q0D2K0 466 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms