RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 PCDH19Q8TAB3 1148 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 RAPGEF5Q92565 580 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 HSPA12BQ96MM6 686 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 HEPHQ9BQS7 1158 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 LACRTQ9GZZ8 138 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 NEUROG2Q9H2A3 272 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 SP110Q9HB58 689 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 DDX56Q9NY93 547 aaKnown RBP22.09■■□□□ 1.13
CLN3-207ENST00000395653 IPO11Q9UI26 975 aaKnown RBP22.09■■□□□ 1.13
CLN3-207ENST00000395653 HYOU1Q9Y4L1 999 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 WASF2Q9Y6W5 498 aa22.09■■□□□ 1.13
CLN3-207ENST00000395653 TNRC6BQ9UPQ9 1833 aaKnown RBP22.08■■□□□ 1.13
CLN3-207ENST00000395653 SDK1Q7Z5N4 2213 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 LRRD1A4D1F6 860 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 PSTPIP1O43586 416 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 HOXD12P35452 270 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 PAFAH1B3Q15102 231 aaKnown RBP22.08■■□□□ 1.13
CLN3-207ENST00000395653 CSRP2Q16527 193 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 TP53INP2Q8IXH6 220 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 NETO2Q8NC67 525 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 LRIG1Q96JA1 1093 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 DESI2Q9BSY9 194 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 PARD6AQ9NPB6 346 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 VPS45Q9NRW7 570 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 SEMA4GQ9NTN9 838 aa22.08■■□□□ 1.13
CLN3-207ENST00000395653 NUP205Q92621 2012 aa22.08■■□□□ 1.12
CLN3-207ENST00000395653 SLC7A4O43246 635 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 IGSF6O95976 241 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 METAP1P53582 386 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 RHOAP61586 193 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 RFTN1Q14699 578 aaPredicted RBP22.07■■□□□ 1.12
CLN3-207ENST00000395653 SYCP2LQ5T4T6 812 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 PEAR1Q5VY43 1037 aaPredicted RBP22.07■■□□□ 1.12
CLN3-207ENST00000395653 NCBP2-AS2Q69YL0 99 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 ARHGAP36Q6ZRI8 547 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 SYT12Q8IV01 421 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 GRIN3AQ8TCU5 1115 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 GDAP1L1Q96MZ0 367 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 ZNF599Q96NL3 588 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 GOLPH3Q9H4A6 298 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 DUSP10Q9Y6W6 482 aa22.07■■□□□ 1.12
CLN3-207ENST00000395653 METTL12A8MUP2 240 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 KPNA3O00505 521 aaPredicted RBP22.06■■□□□ 1.12
CLN3-207ENST00000395653 ARHGAP6O43182 974 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 FOXD2O60548 495 aaPredicted RBP22.06■■□□□ 1.12
CLN3-207ENST00000395653 LEFTY1O75610 366 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 KRT1P04264 644 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 ZNF806P0C7X5 589 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 ITPKAP23677 461 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 KIF5AQ12840 1032 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 CYTH1Q15438 398 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 ARSIQ5FYB1 569 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 WDR45BQ5MNZ6 344 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 DAAM2Q86T65 1068 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 LRRC49Q8IUZ0 686 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 RYBPQ8N488 228 aaPredicted RBP22.06■■□□□ 1.12
CLN3-207ENST00000395653 PIGKQ92643 395 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 PPP1R16AQ96I34 528 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 RNF157Q96PX1 679 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 C6orf106Q9H6K1 298 aaPredicted RBP22.06■■□□□ 1.12
CLN3-207ENST00000395653 ZDHHC6Q9H6R6 413 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 LHX3Q9UBR4 397 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 PILRBQ9UKJ0 227 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 CEP192Q8TEP8 1941 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 LRRC72A6NJI9 287 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 C3orf70A6NLC5 250 aaPredicted RBP22.06■■□□□ 1.12
CLN3-207ENST00000395653 MEI4A8MW99 385 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 MFSD11O43934 449 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 PALMO75781 387 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 POP4O95707 220 aaKnown RBP22.06■■□□□ 1.12
CLN3-207ENST00000395653 TNNT1P13805 278 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 PTPRZ1P23471 2315 aaPredicted RBP22.06■■□□□ 1.12
CLN3-207ENST00000395653 ADPRHP54922 357 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 CCDC15Q0P6D6 951 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 CNTN1Q12860 1018 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 MYLK3Q32MK0 819 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 ODF2Q5BJF6 829 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 AGBL4Q5VU57 503 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 DCAF12L1Q5VU92 463 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP22.06■■□□□ 1.12
CLN3-207ENST00000395653 ATPAF2Q8N5M1 289 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 PQLC3Q8N755 202 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 OR2T34Q8NGX1 318 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 DNASE2BQ8WZ79 361 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 DYRK4Q9NR20 520 aa22.06■■□□□ 1.12
CLN3-207ENST00000395653 MAFKO60675 156 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 NAP1L1P55209 391 aaKnown RBP22.05■■□□□ 1.12
CLN3-207ENST00000395653 RAD51Q06609 339 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 POM121L1PQ3SYA9 428 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 ATXN7L2Q5T6C5 722 aaPredicted RBP22.05■■□□□ 1.12
CLN3-207ENST00000395653 TMCO4Q5TGY1 634 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 LRRC8AQ8IWT6 810 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 OR6K2Q8NGY2 324 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 OR14C36Q8NHC7 312 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 VOPP1Q96AW1 172 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 ARRDC3Q96B67 414 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 OSBPL1AQ9BXW6 950 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 KDM4CQ9H3R0 1056 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 TMEM74BQ9NUR3 256 aa22.05■■□□□ 1.12
CLN3-207ENST00000395653 ZBTB32Q9Y2Y4 487 aaPredicted RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms