RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 KCTD3Q9Y597 815 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 C5orf42Q9H799 3197 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 SLC38A8A6NNN8 435 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 PRRG1O14668 218 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 PLIN3O60664 434 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 GSTA1P08263 222 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 DLDP09622 509 aaKnown RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 CPA3P15088 417 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 ATF6P18850 670 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 MXRA7P84157 204 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 PLD1Q13393 1074 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 PCID2Q5JVF3 399 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 TIGD7Q6NT04 549 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 PKN3Q6P5Z2 889 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 SLC43A3Q8NBI5 491 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 SPPL2BQ8TCT7 592 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 ELMO2Q96JJ3 720 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 SEMA3CQ99985 751 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 TACO1Q9BSH4 297 aaKnown RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 SUDS3Q9H7L9 328 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 ARL8BQ9NVJ2 186 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 PNPOQ9NVS9 261 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 SOX13Q9UN79 622 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 PDCD11Q14690 1871 aaKnown RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 MAGEB16A2A368 324 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 OR51F1A6NGY5 319 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 AURKAO14965 403 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 DIAPH2O60879 1101 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 RTN3O95197 1032 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 FGFR3P22607 806 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 CNTFP26441 200 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 ATP5C1P36542 298 aaKnown RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 SLC1A6P48664 564 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 CDK7P50613 346 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 ZNF135P52742 658 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 SLC12A2P55011 1212 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 USP4Q13107 963 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 ZNF235Q14590 738 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 ANO4Q32M45 955 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 LONP2Q86WA8 852 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 DIS3LQ8TF46 1054 aaKnown RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 MRGPRX2Q96LB1 330 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 FCRL5Q96RD9 977 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 KCNK13Q9HB14 408 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 TMEM39AQ9NV64 488 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 EMCNQ9ULC0 261 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 RUVBL2Q9Y230 463 aaKnown RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 WDR87Q6ZQQ6 2873 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 GOLGA8CPA6NN73 597 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 F5H5T6 163 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 H0Y3Z8 333 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 H7C4K7 107 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 TK2O00142 265 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 FCHO1O14526 889 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 VNN2O95498 520 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 HSPA1AP0DMV8 641 aaKnown RBP11.28□□□□□ -0.6
TCOF1-203ENST00000394269 HSPA1BP0DMV9 641 aaKnown RBP11.28□□□□□ -0.6
TCOF1-203ENST00000394269 RALBP11234 206 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 ESRRAP11474 423 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-203ENST00000394269 CCL5P13501 91 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 HARS2P49590 506 aaKnown RBP11.28□□□□□ -0.6
TCOF1-203ENST00000394269 SCNN1BP51168 640 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 GALNT3Q14435 633 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 USP41Q3LFD5 358 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 CFAP157Q5JU67 520 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 TRIM42Q8IWZ5 723 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 CCNYL1Q8N7R7 359 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 KCTD4Q8WVF5 259 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 SLC39A13Q96H72 371 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 OXCT2Q9BYC2 517 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-203ENST00000394269 MAN1C1Q9NR34 630 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 TMEM189-UBE2V1I3L0A0 370 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 CBX4O00257 560 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 ACRP10323 421 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 RHOQP17081 205 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 NCF2P19878 526 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-203ENST00000394269 GLDCP23378 1020 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 PAX3P23760 479 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 CCR10P46092 362 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 SERPINB8P50452 374 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 LIMK2P53671 638 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 EIF4EBP2Q13542 120 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-203ENST00000394269 RYBPQ8N488 228 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-203ENST00000394269 IFT43Q96FT9 208 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 TMEM169Q96HH4 297 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 IL12RB2Q99665 862 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 CRYL1Q9Y2S2 319 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 HSPA4LO95757 839 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 IKBKEQ14164 716 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 TRIP4Q15650 581 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-203ENST00000394269 MANEALQ5VSG8 457 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 KYAT3Q6YP21 454 aaKnown RBP11.28□□□□□ -0.6
TCOF1-203ENST00000394269 TSGA13Q96PP4 275 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 NOD2Q9HC29 1040 aa11.28□□□□□ -0.6
TCOF1-203ENST00000394269 ZFP37Q9Y6Q3 630 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-203ENST00000394269 A0A0U1RQS6 177 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 SEC24AO95486 1093 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 T-ENOLP0DO92 83 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 TACR2P21452 398 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 GABRB3P28472 473 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms