RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 PNPOQ9NVS9 261 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 GNPTGQ9UJJ9 305 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 ZNF112Q9UJU3 913 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 ARHGEF33A8MVX0 844 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 CLDN25C9JDP6 229 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 PGRMC2O15173 223 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 CHADO15335 359 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 SIN3BO75182 1162 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 TUFMP49411 452 aaKnown RBP11.97□□□□□ -0.49
SYNPO-202ENST00000394243 HNMTP50135 292 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 NOTUMQ6P988 496 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 CXXC5Q7LFL8 322 aaKnown RBP11.97□□□□□ -0.49
SYNPO-202ENST00000394243 EGFL6Q8IUX8 553 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 FITM2Q8N6M3 262 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 KAT5Q92993 513 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 PRKD2Q9BZL6 878 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 SENP6Q9GZR1 1112 aaPredicted RBP11.97□□□□□ -0.49
SYNPO-202ENST00000394243 NYAP2Q9P242 653 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 PRR36Q9H6K5 1346 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 CCRL2O00421 344 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 HDAC3O15379 428 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 TM7SF2O76062 418 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 TOP3BO95985 862 aaKnown RBP11.97□□□□□ -0.49
SYNPO-202ENST00000394243 THRBP10828 461 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 SLC7A2P52569 658 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 CYP4F8P98187 520 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 OOSP2Q86WS3 158 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 ITFG2Q969R8 447 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.97□□□□□ -0.49
SYNPO-202ENST00000394243 SCGNO76038 276 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 RLN1P04808 185 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 ATF6P18850 670 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 CYP2A7P20853 494 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 FSTL1Q12841 308 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 CCSAPQ6IQ19 270 aaPredicted RBP11.97□□□□□ -0.49
SYNPO-202ENST00000394243 DSG4Q86SJ6 1040 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 ECHDC2Q86YB7 292 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 ZC3H7AQ8IWR0 971 aaKnown RBP11.97□□□□□ -0.49
SYNPO-202ENST00000394243 TNS4Q8IZW8 715 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 NXNL1Q96CM4 212 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 VCPIP1Q96JH7 1222 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 APOC4-APOC2K7ER74 178 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 APOC2P02655 101 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 OMPP47874 163 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 OR1G1P47890 313 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 AP1S2P56377 157 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 PHF10Q8WUB8 498 aaKnown RBP11.97□□□□□ -0.49
SYNPO-202ENST00000394243 RAP2CQ9Y3L5 183 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 RRN3P2A6NIE6 340 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 SULT1C3Q6IMI6 304 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 PRR23CQ6ZRP0 262 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 UBE2Q1Q7Z7E8 422 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 GALNT5Q7Z7M9 940 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 TRIM48Q8IWZ4 208 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 OMDQ99983 421 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 TAS2R14Q9NYV8 317 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 SLC17A7Q9P2U7 560 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 KLQ9UEF7 1012 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 TBC1D24Q9ULP9 559 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 U3KQV3 271 aa11.97□□□□□ -0.49
SYNPO-202ENST00000394243 A0A087X0B3 334 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 MDM4O15151 490 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 TEX28O15482 410 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 OR6A2O95222 327 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 DRG2P55039 364 aaKnown RBP11.96□□□□□ -0.49
SYNPO-202ENST00000394243 MARC1Q5VT66 337 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 ULK3Q6PHR2 472 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 PTCHD4Q6ZW05 846 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 YAF2Q8IY57 180 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 ZNF655Q8N720 491 aaPredicted RBP11.96□□□□□ -0.49
SYNPO-202ENST00000394243 DSN1Q9H410 356 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 CXorf21Q9HAI6 301 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 BLOC1S4Q9NUP1 217 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 CDH22Q9UJ99 828 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 SPIBQ01892 262 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 GPR162Q16538 588 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 USP7Q93009 1102 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 SLC38A2Q96QD8 506 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 S100A13Q99584 98 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 OPTCQ9UBM4 332 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 CLEC4AQ9UMR7 237 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 BTRCQ9Y297 605 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 DAGLAQ9Y4D2 1042 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 ASTN2O75129 1339 aaPredicted RBP11.96□□□□□ -0.49
SYNPO-202ENST00000394243 TRIM3O75382 744 aaPredicted RBP11.96□□□□□ -0.49
SYNPO-202ENST00000394243 GLRA2P23416 452 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 MIPP30301 263 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 OLR1P78380 273 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 ARHGEF6Q15052 776 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 PTPN20Q4JDL3 420 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 KHDC1Q4VXA5 237 aaKnown RBP11.96□□□□□ -0.49
SYNPO-202ENST00000394243 OGFOD2Q6N063 350 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 NPNTQ6UXI9 565 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 UNC5AQ6ZN44 842 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 BBS4Q96RK4 519 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 NMUR2Q9GZQ4 415 aa11.96□□□□□ -0.49
SYNPO-202ENST00000394243 MGRN1O60291 552 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 SHOX2O60902 331 aaPredicted RBP11.96□□□□□ -0.5
SYNPO-202ENST00000394243 GH1P01241 217 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 INTS11Q5TA45 600 aaKnown RBP11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms