RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 ABI1Q8IZP0 508 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 NPWQ8N729 165 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CFAP61Q8NHU2 1237 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 DQX1Q8TE96 717 aaKnown RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 NAF1Q96HR8 494 aaKnown RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 THTPAQ9BU02 230 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CCDC68Q9H2F9 335 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CATSPERBQ9H7T0 1116 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 EMCNQ9ULC0 261 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CDY1Q9Y6F8 540 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 ITM2AO43736 263 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 MAGEC1O60732 1142 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 ANXA9O76027 345 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 MYL4P12829 197 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 GM2AP17900 193 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 GNAZP19086 355 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 SAT1P21673 171 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 BRCC3P46736 316 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 GSTM4Q03013 218 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 KLC1Q07866 573 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 ZBTB17Q13105 803 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 ARHGEF6Q15052 776 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 UPP1Q16831 310 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 OVOS1Q6IE37 1185 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 TREML1Q86YW5 311 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 SPATA2LQ8IUW3 424 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-204ENST00000392003 SCUBE1Q8IWY4 988 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 C3orf58Q8NDZ4 430 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 URGCPQ8TCY9 931 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 MFSD3Q96ES6 412 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 PPP1R2P1Q96PQ5 205 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 RHOBTB2Q9BYZ6 727 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 SOX13Q9UN79 622 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 HTR3EA5X5Y0 456 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 PRR5-ARHGAP8B1AHC4 643 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 H2AFYO75367 372 aaKnown RBP9.79□□□□□ -0.84
COL6A3-204ENST00000392003 APOA4P06727 396 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 SKIP12755 728 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 NCF2P19878 526 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-204ENST00000392003 VHLP40337 213 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 PTDSS1P48651 473 aaKnown RBP9.79□□□□□ -0.84
COL6A3-204ENST00000392003 ARHGAP8P85298 464 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 FRG1Q14331 258 aaKnown RBP9.79□□□□□ -0.84
COL6A3-204ENST00000392003 PDPK2PQ6A1A2 396 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 FSTL4Q6MZW2 842 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 LZTR1Q8N653 840 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 RBM15BQ8NDT2 890 aaKnown RBP9.79□□□□□ -0.84
COL6A3-204ENST00000392003 SCYL1Q96KG9 808 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 EBF4Q9BQW3 602 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 C20orf27Q9GZN8 174 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 OSBPL2Q9H1P3 480 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 CSNK1G1Q9HCP0 422 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 ANLNQ9NQW6 1124 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 STARD7Q9NQZ5 370 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 SRRDQ9UH36 339 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 ANGPTL2Q9UKU9 493 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 SLC39A10Q9ULF5 831 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 CAPN14A8MX76 684 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 HHLA1C9JL84 531 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 CABYRO75952 493 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 PSMG1O95456 288 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 CD68P34810 354 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-204ENST00000392003 ACLYP53396 1101 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 ZNF33AQ06730 810 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 THOC5Q13769 683 aaKnown RBP9.79□□□□□ -0.84
COL6A3-204ENST00000392003 UGP2Q16851 508 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 FSCBQ5H9T9 825 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 BRMS1LQ5PSV4 323 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 CES4AQ5XG92 561 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 PM20D1Q6GTS8 502 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 RAVER1Q8IY67 606 aaKnown RBP9.79□□□□□ -0.84
COL6A3-204ENST00000392003 AGAP2Q99490 1192 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 MLPHQ9BV36 600 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-204ENST00000392003 CCDC106Q9BWC9 280 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 CHRAC1Q9NRG0 131 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 ABCC13Q9NSE7 274 aa9.79□□□□□ -0.84
COL6A3-204ENST00000392003 LIN7AO14910 233 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-204ENST00000392003 NVLO15381 856 aaKnown RBP9.78□□□□□ -0.84
COL6A3-204ENST00000392003 CCNCP24863 283 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 CCR1P32246 355 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 GRIK1P39086 918 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 GEMP55040 296 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 TUSC3Q13454 348 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 USP10Q14694 798 aaKnown RBP9.78□□□□□ -0.84
COL6A3-204ENST00000392003 TRMT5Q32P41 509 aaKnown RBP9.78□□□□□ -0.84
COL6A3-204ENST00000392003 KCTD11Q693B1 232 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 MRPL10Q7Z7H8 261 aaKnown RBP9.78□□□□□ -0.84
COL6A3-204ENST00000392003 SCN4BQ8IWT1 228 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 GABPB2Q8TAK5 448 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-204ENST00000392003 DNAJC9Q8WXX5 260 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 VPS39Q96JC1 886 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 PAAF1Q9BRP4 392 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 NMRAL1Q9HBL8 299 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 PFDN4Q9NQP4 134 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 PNPOQ9NVS9 261 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 DNAJC28Q9NX36 388 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 PRG3Q9Y2Y8 225 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-204ENST00000392003 ZCWPW2A0A1B0GU75 182 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 FGF10O15520 208 aaPredicted RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms