RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 GJC1P36383 396 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 NBL1P41271 181 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 GPS1Q13098 491 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 CBLBQ13191 982 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 TMED2Q15363 201 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 HADHQ16836 314 aaKnown RBP12.65□□□□□ -0.38
VRK3-202ENST00000377011 RAB6CQ53S08 254 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 FAM133BQ5BKY9 247 aaKnown RBP12.65□□□□□ -0.38
VRK3-202ENST00000377011 EFHC2Q5JST6 749 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 DGKKQ5KSL6 1271 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 HEATR6Q6AI08 1181 aaKnown RBP12.65□□□□□ -0.38
VRK3-202ENST00000377011 RFWD3Q6PCD5 774 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 BBS12Q6ZW61 710 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 ERICH1Q86X53 443 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 DEFB106AQ8N104 65 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 ARHGAP18Q8N392 663 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 SPEM1Q8N4L4 309 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 FBF1Q8TES7 1133 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 PRCCQ92733 491 aaPredicted RBP12.65□□□□□ -0.38
VRK3-202ENST00000377011 SMC6Q96SB8 1091 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 ACOX2Q99424 681 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 BBS2Q9BXC9 721 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 RAB6CQ9H0N0 254 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 ANLNQ9NQW6 1124 aa12.65□□□□□ -0.38
VRK3-202ENST00000377011 DNAJC17Q9NVM6 304 aaKnown RBP12.65□□□□□ -0.38
VRK3-202ENST00000377011 PSMC3IPQ9P2W1 217 aaPredicted RBP12.65□□□□□ -0.38
VRK3-202ENST00000377011 FARP1Q9Y4F1 1045 aaPredicted RBP12.65□□□□□ -0.38
VRK3-202ENST00000377011 SIGLEC16A6NMB1 481 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 CHURC1-FNTBB4DL54 471 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 I6L893 689 aaPredicted RBP12.64□□□□□ -0.39
VRK3-202ENST00000377011 WFS1O76024 890 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 ADH1CP00326 375 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 DRD1P21728 446 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 GCAP28676 217 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 KIR2DL1P43626 348 aaPredicted RBP12.64□□□□□ -0.39
VRK3-202ENST00000377011 CXCL12P48061 93 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 FNTBP49356 437 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 COG7P83436 770 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 GAD2Q05329 585 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 EIF4EBP2Q13542 120 aaPredicted RBP12.64□□□□□ -0.39
VRK3-202ENST00000377011 LRRC32Q14392 662 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 PDK4Q16654 411 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 DAB2IPQ5VWQ8 1189 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 ASRGL1Q7L266 308 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 PPIL6Q8IXY8 311 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 KIAA1958Q8N8K9 716 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 GPATCH11Q8N954 259 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 WFDC5Q8TCV5 224 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 ZNF398Q8TD17 642 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 USP33Q8TEY7 942 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 RNF139Q8WU17 664 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 HHIPQ96QV1 700 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 PRRX2Q99811 253 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 PITPNM3Q9BZ71 974 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 TRABDQ9H4I3 376 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 EBF2Q9HAK2 575 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 ARHGEF4Q9NR80 690 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 TXLNGQ9NUQ3 528 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 MARK1Q9P0L2 795 aa12.64□□□□□ -0.39
VRK3-202ENST00000377011 LRRD1A4D1F6 860 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 C3orf70A6NLC5 250 aaPredicted RBP12.63□□□□□ -0.39
VRK3-202ENST00000377011 E7ESA3 106 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 SGK1O00141 431 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 ADAM23O75077 832 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 FBXO21O94952 628 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 ZWINTO95229 277 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 PENKP01210 267 aaPredicted RBP12.63□□□□□ -0.39
VRK3-202ENST00000377011 IGLV3-25P01717 112 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 KRT10P13645 584 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 TIE1P35590 1138 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 WASP42768 502 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 NUMBP49757 651 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 ATXN1P54253 815 aaKnown RBP12.63□□□□□ -0.39
VRK3-202ENST00000377011 ARL4CP56559 192 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 WDR4P57081 412 aaKnown RBP12.63□□□□□ -0.39
VRK3-202ENST00000377011 HIF1AQ16665 826 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 GEN1Q17RS7 908 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 KLHL38Q2WGJ6 581 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 ZFYVE27Q5T4F4 411 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 TMEM215Q68D42 235 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 OR6B2Q6IFH4 312 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 CGB2Q6NT52 195 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 TMEM92Q6UXU6 159 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 FAM217AQ8IXS0 508 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 ATP11CQ8NB49 1132 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 GDAP1Q8TB36 358 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 ALKBH8Q96BT7 664 aaKnown RBP12.63□□□□□ -0.39
VRK3-202ENST00000377011 KLHL29Q96CT2 875 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 OTUB2Q96DC9 234 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 SLC39A13Q96H72 371 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 PRICKLE1Q96MT3 831 aaPredicted RBP12.63□□□□□ -0.39
VRK3-202ENST00000377011 PWWP2AQ96N64 755 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 TMPRSS4Q9NRS4 437 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 TBK1Q9UHD2 729 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 LSM7Q9UK45 103 aaKnown RBP12.63□□□□□ -0.39
VRK3-202ENST00000377011 USH1CQ9Y6N9 552 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 SPTBN4Q9H254 2564 aa12.63□□□□□ -0.39
VRK3-202ENST00000377011 SYNJ2BP-COX16A0A087WUM0 186 aa12.62□□□□□ -0.39
VRK3-202ENST00000377011 WASH3PC4AMC7 463 aa12.62□□□□□ -0.39
VRK3-202ENST00000377011 HRO43593 1189 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms