RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 KIF5AQ12840 1032 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 COASYQ13057 564 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 ALKBH1Q13686 389 aaKnown RBP2.37□□□□□ -2.03
VPS13A-206ENST00000376646 PLCB4Q15147 1175 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 TTC22Q5TAA0 569 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 ATPAF1Q5TC12 328 aaPredicted RBP2.37□□□□□ -2.03
VPS13A-206ENST00000376646 HEPHL1Q6MZM0 1159 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 NFRKBQ6P4R8 1299 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 FAM185AQ8N0U4 392 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 GPT2Q8TD30 523 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 TLR8Q9NR97 1041 aaKnown RBP2.37□□□□□ -2.03
VPS13A-206ENST00000376646 SLC22A11Q9NSA0 550 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 UPB1Q9UBR1 384 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 KLQ9UEF7 1012 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 SAC3D1A6NKF1 404 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 SMTNL1A8MU46 457 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 C17orf100A8MU93 164 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 GAS8-AS1O95177 125 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 DDAH2O95865 285 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 ITGA2BP08514 1039 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 FCGR1AP12314 374 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 ACP5P13686 325 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 CD72P21854 359 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 SERPINA4P29622 427 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 PCP4P48539 62 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 CCT5P48643 541 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 GAS1P54826 345 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 CDH12P55289 794 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 FOXO1Q12778 655 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 PPFIA1Q13136 1202 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 MYBPC2Q14324 1141 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 CREB3L2Q70SY1 520 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 SYT13Q7L8C5 426 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 SLC44A2Q8IWA5 706 aaPredicted RBP2.37□□□□□ -2.03
VPS13A-206ENST00000376646 CLIP4Q8N3C7 705 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 GALNT15Q8N3T1 639 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 OR14A16Q8NHC5 309 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 STT3BQ8TCJ2 826 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 SLC2A12Q8TD20 617 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 RUBCNQ92622 972 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 FAM167BQ9BTA0 163 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 SAGE1Q9NXZ1 904 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 ICAM5Q9UMF0 924 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 RAI2Q9Y5P3 530 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 SRRM3A6NNA2 597 aaPredicted RBP2.36□□□□□ -2.03
VPS13A-206ENST00000376646 VWA5AO00534 786 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 GLUD1P00367 558 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 IGKV3-20P01619 116 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 HSD3B1P14060 373 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 GNLYP22749 145 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 MAPK9P45984 424 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 KCNJ4P48050 445 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 GLUD2P49448 558 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 AP2B1P63010 937 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 TDRD12Q587J7 1177 aaKnown RBP2.36□□□□□ -2.03
VPS13A-206ENST00000376646 RETSATQ6NUM9 610 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 KLHL17Q6TDP4 642 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 TMPRSS12Q86WS5 348 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 CCDC117Q8IWD4 279 aaPredicted RBP2.36□□□□□ -2.03
VPS13A-206ENST00000376646 SCAIQ8N9R8 606 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 CSGALNACT1Q8TDX6 532 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 FAR1Q8WVX9 515 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 FIZ1Q96SL8 496 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 XRN2Q9H0D6 950 aaKnown RBP eCLIP2.36□□□□□ -2.03
VPS13A-206ENST00000376646 CXorf56Q9H5V9 222 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 ZNF556Q9HAH1 456 aa2.36□□□□□ -2.03
VPS13A-206ENST00000376646 A0A1B0GUV1 79 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 PLSCR5A0PG75 271 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 HMX3A6NHT5 357 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 FAM90A20PA6NIJ5 464 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 BTBD18B2RXH4 712 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 KRT38O76015 456 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 AFPP02771 609 aaKnown RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 CHN1P15882 459 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 PRKCHP24723 683 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 RFC1P35251 1148 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 PTPN9P43378 593 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 NUDT6P53370 316 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 DCTN1Q14203 1278 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 AP5B1Q2VPB7 878 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 KRTAP27-1Q3LI81 207 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 VWA5B1Q5TIE3 1220 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 TBC1D9BQ66K14 1250 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 RAB11FIP2Q7L804 512 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 WDR5BQ86VZ2 330 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 BRSK2Q8IWQ3 736 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 OTUD7AQ8TE49 926 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 SLC35F5Q8WV83 523 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 ATOH1Q92858 354 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 RILPL2Q969X0 211 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 GCC1Q96CN9 775 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 EID2BQ96D98 161 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 PIGSQ96S52 555 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 NPAS1Q99742 590 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 IFT27Q9BW83 186 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 C1QTNF4Q9BXJ3 329 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 IL25Q9H293 177 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 RETREG1Q9H6L5 497 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 PLEKHA2Q9HB19 425 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 C9orf78Q9NZ63 289 aaPredicted RBP2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms