RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 HYIQ5T013 277 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 ATAD3BQ5T9A4 648 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 ZCCHC8Q6NZY4 707 aaKnown RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 DHDDSQ86SQ9 333 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 AMIGO3Q86WK7 504 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 KIAA0319LQ8IZA0 1049 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 PTGR2Q8N8N7 351 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 TPD52L3Q96J77 140 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 SEMA4BQ9NPR2 832 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 PIPSLA2A3N6 862 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 CENPXA8MT69 81 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 DYRK3O43781 588 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 CATP04040 527 aaKnown RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 ITGA2BP08514 1039 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 AKR1A1P14550 325 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 ADARP55265 1226 aaKnown RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 TAS2R40P59535 323 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 PRKCQQ04759 706 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 SLC20A2Q08357 652 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 MAPK11Q15759 364 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 GRIK5Q16478 980 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 GSTA3Q16772 222 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 WSCD1Q658N2 575 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 ZNF544Q6NX49 715 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 C8orf59Q8N0T1 100 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 RP9Q8TA86 221 aaKnown RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 YME1L1Q96TA2 773 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 EPB41L4BQ9H329 900 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.56□□□□□ -0.565e-9■■□□□ 13.6
PTPRF-203ENST00000372407 VPS51Q9UID3 782 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 FBXO5Q9UKT4 447 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 C2CD2Q9Y426 696 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 SMIM31A0A1B0GVY4 71 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 TCRBV9S1A1TA0A576 114 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 PIAS1O75925 651 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 SERPINA6P08185 405 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 ERCC2P18074 760 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 PAICSP22234 425 aaKnown RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 RPL5P46777 297 aaKnown RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 GRIA4P48058 902 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 TAF5Q15542 800 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 ZC3H12AQ5D1E8 599 aaKnown RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 PDZK1Q5T2W1 519 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 ZNF276Q8N554 614 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 MAGEE2Q8TD90 523 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 SERAC1Q96JX3 654 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 MBOAT7Q96N66 472 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 KLQ9UEF7 1012 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 CDH9Q9ULB4 789 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 FAM25AB3EWG3 89 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 FAM25CB3EWG5 89 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 FAM25GB3EWG6 89 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 MAFO75444 373 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 CABYRO75952 493 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 FGFR1P11362 822 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 PTPRAP18433 802 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 TYMPP19971 482 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 DGKAP23743 735 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 ITGA1P56199 1179 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 POLR2LP62875 67 aaKnown RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 IRF8Q02556 426 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 CAPSQ13938 189 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 VGLL4Q14135 290 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 CRY1Q16526 586 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 PHKG1Q16816 387 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 STXBP5Q5T5C0 1151 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 TRIQKQ629K1 86 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 TMC5Q6UXY8 1006 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 SYT12Q8IV01 421 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 SELENOMQ8WWX9 145 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 ARMC7Q9H6L4 198 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 RPS6KB2Q9UBS0 482 aa11.56□□□□□ -0.56
PTPRF-203ENST00000372407 LEF1Q9UJU2 399 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-203ENST00000372407 NHSL1Q5SYE7 1610 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 PEX11AO75192 247 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 CCNB1P14635 433 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 PTPN3P26045 913 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 CDC25CP30307 473 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 NR1H2P55055 460 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 NAA20P61599 178 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 TRAF3Q13114 568 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 ACVR2BQ13705 512 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 TRIM25Q14258 630 aaKnown RBP11.55□□□□□ -0.56
PTPRF-203ENST00000372407 SQLEQ14534 574 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 SLC39A12Q504Y0 691 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 INO80DQ53TQ3 878 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-203ENST00000372407 FGD3Q5JSP0 725 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 ZNF605Q86T29 641 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 KRT73Q86Y46 540 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 CENPIQ92674 756 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-203ENST00000372407 REPS1Q96D71 796 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 SPAG4Q9NPE6 437 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 MORF4L1Q9UBU8 362 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 ZNF112Q9UJU3 913 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 TRIM38O00635 465 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 EPN2O95208 641 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 ANXA5P08758 320 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 MYL12AP19105 171 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 ATP6V1C1P21283 382 aa11.55□□□□□ -0.56
PTPRF-203ENST00000372407 ADCYAP1R1P41586 468 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms