RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SETD3Q86TU7 594 aaPredicted RBP14□□□□□ -0.17
PTPRF-202ENST00000372405 SHKBP1Q8TBC3 707 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 MICAL1Q8TDZ2 1067 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 ZNF669Q96BR6 464 aaPredicted RBP14□□□□□ -0.17
PTPRF-202ENST00000372405 ACE2Q9BYF1 805 aaPredicted RBP14□□□□□ -0.17
PTPRF-202ENST00000372405 SMG9Q9H0W8 520 aaKnown RBP14□□□□□ -0.17
PTPRF-202ENST00000372405 ATP13A1Q9HD20 1204 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 ASAH2Q9NR71 780 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 SOX13Q9UN79 622 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 PSAT1Q9Y617 370 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 IKBKGQ9Y6K9 419 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-202ENST00000372405 IQANK1A0A1B0GTG1 560 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 FAM47DPA6NHR8 397 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 SRRM3A6NNA2 597 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-202ENST00000372405 GOLGA8RI6L899 631 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 CLASP2O75122 1294 aaKnown RBP13.99□□□□□ -0.17
PTPRF-202ENST00000372405 USP1O94782 785 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 RHOCP08134 193 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 NMBRP28336 390 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 CDC25CP30307 473 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 RPA3P35244 121 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-202ENST00000372405 EPHA5P54756 1037 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 ITKQ08881 620 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 ZNF177Q13360 481 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-202ENST00000372405 MPP3Q13368 585 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 PCSK7Q16549 785 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 IL31Q6EBC2 164 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 FOXR1Q6PIV2 292 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 MARK2Q7KZI7 788 aaKnown RBP13.99□□□□□ -0.17
PTPRF-202ENST00000372405 ELMOD1Q8N336 334 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 TTC16Q8NEE8 873 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 WFDC5Q8TCV5 224 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 BCAS4Q8TDM0 211 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 CERS2Q96G23 380 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 NSMCE3Q96MG7 304 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 PPP1R2P1Q96PQ5 205 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 ZNF317Q96PQ6 595 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-202ENST00000372405 SMC6Q96SB8 1091 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 SPON2Q9BUD6 331 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 KIFC1Q9BW19 673 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 CCDC134Q9H6E4 229 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 CFAP97Q9P2B7 532 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 DNMT3BQ9UBC3 853 aaKnown RBP13.99□□□□□ -0.17
PTPRF-202ENST00000372405 FAM169AQ9Y6X4 670 aa13.99□□□□□ -0.17
PTPRF-202ENST00000372405 TRIM49D1C9J1S8 452 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 KDELR3O43731 214 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 TBL1XO60907 577 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 MSLNQ13421 630 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-202ENST00000372405 BMPR2Q13873 1038 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 FRG1Q14331 258 aaKnown RBP13.98□□□□□ -0.17
PTPRF-202ENST00000372405 POU6F1Q14863 301 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 SLC5A9Q2M3M2 681 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 TTC39BQ5VTQ0 682 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-202ENST00000372405 HTR3DQ70Z44 454 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 BBS7Q8IWZ6 715 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 BANPQ8N9N5 519 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 RIN3Q8TB24 985 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 NSMCE1Q8WV22 266 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 ZNF599Q96NL3 588 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 DDX50Q9BQ39 737 aaKnown RBP13.98□□□□□ -0.17
PTPRF-202ENST00000372405 HTATIP2Q9BUP3 242 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 FSD1LQ9BXM9 530 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 SSU72Q9NP77 194 aaKnown RBP13.98□□□□□ -0.17
PTPRF-202ENST00000372405 CCL26Q9Y258 94 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 MYOFQ9NZM1 2061 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 TRAV19A0A0A6YYK7 116 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 MAGEB16A2A368 324 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 CCDC78A2IDD5 438 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 GMNCA6NCL1 334 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 C1RP00736 705 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 RB1P06400 928 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 RGRP47804 291 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 SLC18A1P54219 525 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 OXCT1P55809 520 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 MGAT5Q09328 741 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 SHHQ15465 462 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 RNF219Q5W0B1 726 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-202ENST00000372405 ALG1LQ6GMV1 187 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.98□□□□□ -0.17
PTPRF-202ENST00000372405 ATP2A3Q93084 1043 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 CCT8L2Q96SF2 557 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 SEMA3CQ99985 751 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 C12orf65Q9H3J6 166 aaKnown RBP13.98□□□□□ -0.17
PTPRF-202ENST00000372405 ARNT2Q9HBZ2 717 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 VPS45Q9NRW7 570 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 GRID1Q9ULK0 1009 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 OR51B4Q9Y5P0 310 aa13.98□□□□□ -0.17
PTPRF-202ENST00000372405 AP3B1O00203 1094 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 LEFTY2O00292 366 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 PER2O15055 1255 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 RFPL1O75677 317 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 ASMTLO95671 621 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 CD160O95971 181 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 MT-ND3P03897 115 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 F7P08709 466 aaPredicted RBP13.97□□□□□ -0.17
PTPRF-202ENST00000372405 SNRPAP09012 282 aaKnown RBP13.97□□□□□ -0.17
PTPRF-202ENST00000372405 MZF1P28698 734 aaPredicted RBP13.97□□□□□ -0.17
PTPRF-202ENST00000372405 ARF5P84085 180 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 SLC18A2Q05940 514 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms