RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 BBS5Q8N3I7 341 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 PSKH2Q96QS6 385 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 SLC25A51Q9H1U9 297 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 ARFGAP3Q9NP61 516 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 EIF2B3Q9NR50 452 aaKnown RBP20.22■□□□□ 0.83
CLN3-205ENST00000359984 UBP1Q9NZI7 540 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 ARNTLO00327 626 aa20.21■□□□□ 0.83
CLN3-205ENST00000359984 ATP8B1O43520 1251 aa20.21■□□□□ 0.83
CLN3-205ENST00000359984 TMCC1O94876 653 aa20.21■□□□□ 0.83
CLN3-205ENST00000359984 CTSOP43234 321 aaPredicted RBP20.21■□□□□ 0.83
CLN3-205ENST00000359984 DSC2Q02487 901 aa20.21■□□□□ 0.83
CLN3-205ENST00000359984 PRPSAP1Q14558 356 aa20.21■□□□□ 0.83
CLN3-205ENST00000359984 GEN1Q17RS7 908 aa20.21■□□□□ 0.83
CLN3-205ENST00000359984 TMEM215Q68D42 235 aa20.21■□□□□ 0.83
CLN3-205ENST00000359984 KCTD11Q693B1 232 aa20.21■□□□□ 0.83
CLN3-205ENST00000359984 MCUQ8NE86 351 aa20.21■□□□□ 0.83
CLN3-205ENST00000359984 ARRDC2Q8TBH0 407 aa20.21■□□□□ 0.83
CLN3-205ENST00000359984 IMP4Q96G21 291 aaKnown RBP20.21■□□□□ 0.83
CLN3-205ENST00000359984 PHF7Q9BWX1 381 aaPredicted RBP20.21■□□□□ 0.83
CLN3-205ENST00000359984 FOXP3Q9BZS1 431 aa20.21■□□□□ 0.83
CLN3-205ENST00000359984 TTC24A2A3L6 582 aaPredicted RBP20.2■□□□□ 0.82
CLN3-205ENST00000359984 K7ERQ8 282 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 CDK16Q00536 496 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 SPARCL1Q14515 664 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 LEXMQ3ZCV2 418 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 PRPF39Q86UA1 669 aaKnown RBP20.2■□□□□ 0.82
CLN3-205ENST00000359984 CCDC25Q86WR0 208 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 AHI1Q8N157 1196 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 RBM15Q96T37 977 aaKnown RBP eCLIP20.2■□□□□ 0.82
CLN3-205ENST00000359984 MGME1Q9BQP7 344 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 POLR1EQ9GZS1 481 aaKnown RBP20.2■□□□□ 0.82
CLN3-205ENST00000359984 SLC27A6Q9Y2P4 619 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 GJB3O75712 270 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 AP2A1O95782 977 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 MT-CYBP00156 380 aaPredicted RBP20.2■□□□□ 0.82
CLN3-205ENST00000359984 GJA4P35212 333 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 GRIA1P42261 906 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 RGRP47804 291 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 SERPINH1P50454 418 aaKnown RBP20.2■□□□□ 0.82
CLN3-205ENST00000359984 GEMIN4P57678 1058 aaKnown RBP20.2■□□□□ 0.82
CLN3-205ENST00000359984 DHX9Q08211 1270 aaKnown RBP20.2■□□□□ 0.82
CLN3-205ENST00000359984 SLC20A2Q08357 652 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 MESP2Q0VG99 397 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 IHHQ14623 411 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 SMAD2Q15796 467 aaKnown RBP20.2■□□□□ 0.82
CLN3-205ENST00000359984 FNBP1LQ5T0N5 605 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 MBLAC2Q68D91 279 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 TMC3Q7Z5M5 1100 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 TTC17Q96AE7 1141 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 RPL10LQ96L21 214 aaKnown RBP20.2■□□□□ 0.82
CLN3-205ENST00000359984 TXLNGYQ9BZA5 131 aa20.2■□□□□ 0.82
CLN3-205ENST00000359984 AAR2Q9Y312 384 aaKnown RBP20.2■□□□□ 0.82
CLN3-205ENST00000359984 FCF1Q9Y324 198 aaKnown RBP20.2■□□□□ 0.82
CLN3-205ENST00000359984 PRUNE2Q8WUY3 3088 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 CXorf51AA0A1B0GTR3 108 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 SMAD6O43541 496 aaKnown RBP20.19■□□□□ 0.82
CLN3-205ENST00000359984 ANXA9O76027 345 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 MMP2P08253 660 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 STK19P49842 368 aaPredicted RBP20.19■□□□□ 0.82
CLN3-205ENST00000359984 OLIG2Q13516 323 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 HIF1AQ16665 826 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 AAK1Q2M2I8 961 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 ITPRIPL2Q3MIP1 535 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 ALG1LQ6GMV1 187 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 ZNF534Q76KX8 674 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 CAND1Q86VP6 1230 aaKnown RBP20.19■□□□□ 0.82
CLN3-205ENST00000359984 SERPINB12Q96P63 405 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 SEMA3CQ99985 751 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 TSPYL1Q9H0U9 437 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 BRD9Q9H8M2 597 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 HAUS2Q9NVX0 235 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 DEC1Q9P2X7 70 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 LHX3Q9UBR4 397 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 LIMD1Q9UGP4 676 aa20.19■□□□□ 0.82
CLN3-205ENST00000359984 ERI2A8K979 691 aaKnown RBP20.18■□□□□ 0.82
CLN3-205ENST00000359984 PPFIA2O75334 1257 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 SUN1O94901 812 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 OPRD1P41143 372 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 CD86P42081 329 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 TNNT3P45378 269 aaPredicted RBP20.18■□□□□ 0.82
CLN3-205ENST00000359984 GEMP55040 296 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 ARL4CP56559 192 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 ECT2LQ008S8 904 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 SULT2A1Q06520 285 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 MTM1Q13496 603 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 MSS51Q4VC12 460 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 NAIF1Q69YI7 327 aaPredicted RBP20.18■□□□□ 0.82
CLN3-205ENST00000359984 GRAMD4Q6IC98 578 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 PPP1R21Q6ZMI0 780 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 ATP11CQ8NB49 1132 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 WFIKKN2Q8TEU8 576 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 TADA1Q96BN2 335 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 CHFRQ96EP1 664 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 EXOC2Q96KP1 924 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 PPP1R2P1Q96PQ5 205 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 HS3ST2Q9Y278 367 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 GOLGA6CA6NDK9 693 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 GOLGA6BA6NDN3 693 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 PSMD3O43242 534 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 AVILO75366 819 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms