RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 GALNT5Q7Z7M9 940 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 HMGN2P46Q86SG4 172 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 ADGRG2Q8IZP9 1017 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 TPP1O14773 563 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 AGTP01019 485 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 IDH2P48735 452 aaKnown RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 MLLT1Q03111 559 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 UGP2Q16851 508 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 PITRM1Q5JRX3 1037 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 TTLL10Q6ZVT0 673 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 USP45Q70EL2 814 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 TADA1Q96BN2 335 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 KIF2CQ99661 725 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 AARSD1Q9BTE6 412 aaKnown RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 NSMCE4AQ9NXX6 385 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 ARL2BPQ9Y2Y0 163 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 MROH7Q68CQ1 1323 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 LOC102724159A0A0B4J2E5 919 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 RARAP10276 462 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 COX10Q12887 443 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 PWP2Q15269 919 aaKnown RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 ATAD3BQ5T9A4 648 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 GPSM1Q86YR5 675 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 SMARCD1Q96GM5 515 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 DNMT3LQ9UJW3 386 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 NR2F1P10589 423 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CYP4B1P13584 511 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 POU2F1P14859 743 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CORO1AP31146 461 aaKnown RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 NR0B1P51843 470 aaKnown RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 RHAGQ02094 409 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CREB5Q02930 508 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 RIN1Q13671 783 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 WDR49Q8IV35 697 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 C4orf19Q8IY42 314 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 HDAC10Q969S8 669 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 TBL1YQ9BQ87 522 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 MCMBPQ9BTE3 642 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 DPP7Q9UHL4 492 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 HIST1H2ABP04908 130 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 RPA3P35244 121 aaPredicted RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 RASA2Q15283 850 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 ARSIQ5FYB1 569 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 PIK3R6Q5UE93 754 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 HIST3H2AQ7L7L0 130 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CADM2Q8N3J6 435 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 BPIFB6Q8NFQ5 453 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 HIST1H2ACQ93077 130 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CAMKK2Q96RR4 588 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 KCNK16Q96T55 309 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 PLAGL1Q9UM63 463 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 UGT2B4P06133 528 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 UBA1P22314 1058 aaKnown RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 RPL21P46778 160 aaKnown RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 TERF2Q15554 542 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 RFX4Q33E94 735 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 BOLA3Q53S33 107 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 C9orf64Q5T6V5 341 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 SMYD5Q6GMV2 418 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 PGBD2Q6P3X8 592 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 TRPM8Q7Z2W7 1104 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 SPATA22Q8NHS9 363 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 SOCS4Q8WXH5 440 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CDRT15Q96T59 188 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 TMEM79Q9BSE2 394 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 RBCK1Q9BYM8 510 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 C17orf75Q9HAS0 396 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 RAD51BO15315 384 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 HOXA2O43364 376 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 VPS4BO75351 444 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 ALOX12P18054 663 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 AHCYP23526 432 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 LBX1P52954 281 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 NOGQ13253 232 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF460Q14592 562 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 ARSJQ5FYB0 599 aaPredicted RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 VITQ6UXI7 678 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CHST9Q7L1S5 443 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 DPP10Q8N608 796 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 HTR3CQ8WXA8 447 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 FBXO44Q9H4M3 255 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 RMND5AQ9H871 391 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 OPTCQ9UBM4 332 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CA14Q9ULX7 337 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 A0A1W2PQC6 194 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CFHP08603 1231 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 SERPINB9P50453 376 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CHAF1BQ13112 559 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 ATP1A4Q13733 1029 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CRY1Q16526 586 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 AMIGO2Q86SJ2 522 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 MCOLN3Q8TDD5 553 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CERS2Q96G23 380 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 REXO5Q96IC2 774 aaKnown RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 QKIQ96PU8 341 aaKnown RBP eCLIP7.43□□□□□ -1.223e-10■■■□□ 17.4
VPS13A-202ENST00000357409 ABCC13Q9NSE7 274 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 ERVK-21P61565 698 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 RPL7AP62424 266 aaKnown RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 FASTKQ14296 549 aaKnown RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms