RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CCT8L2Q96SF2 557 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 ZFATQ9P243 1243 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 LSM7Q9UK45 103 aaKnown RBP13.59□□□□□ -0.23
HMGB1-202ENST00000339872 DOCK6Q96HP0 2047 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 TRAV19A0A0A6YYK7 116 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 MAGEB16A2A368 324 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 CCDC78A2IDD5 438 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 GRXCR1A8MXD5 290 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 GREM1O60565 184 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 TBL1XO60907 577 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 RFPL2O75678 378 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 KRT38O76015 456 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 GLDCP23378 1020 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 RPA3P35244 121 aaPredicted RBP13.59□□□□□ -0.23
HMGB1-202ENST00000339872 IRS1P35568 1242 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 OXCT1P55809 520 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 UBE3AQ05086 875 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 TNK2Q07912 1038 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 MGAT5Q09328 741 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 POU6F1Q14863 301 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 Q6ZNB5 142 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 SETD3Q86TU7 594 aaPredicted RBP13.59□□□□□ -0.23
HMGB1-202ENST00000339872 CHMP6Q96FZ7 201 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 ZNF599Q96NL3 588 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 PAIP2Q9BPZ3 127 aaKnown RBP13.59□□□□□ -0.23
HMGB1-202ENST00000339872 HTATIP2Q9BUP3 242 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 POLR1EQ9GZS1 481 aaKnown RBP13.59□□□□□ -0.23
HMGB1-202ENST00000339872 ATP13A1Q9HD20 1204 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 SSU72Q9NP77 194 aaKnown RBP13.59□□□□□ -0.23
HMGB1-202ENST00000339872 MAN1C1Q9NR34 630 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 ACTL7AQ9Y615 435 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 FAM169AQ9Y6X4 670 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 ZCWPW2A0A1B0GU75 182 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 ILVBLA1L0T0 632 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 TYW5A2RUC4 315 aaKnown RBP13.58□□□□□ -0.23
HMGB1-202ENST00000339872 GRM6O15303 877 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 FAM107AO95990 144 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 MMP2P08253 660 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 CHRNA4P43681 627 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 SERPINB9P50453 376 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 CXorf57Q6NSI4 855 aaKnown RBP13.58□□□□□ -0.23
HMGB1-202ENST00000339872 CARNMT1Q8N4J0 409 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 SLC25A41Q8N5S1 370 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 HJURPQ8NCD3 748 aaPredicted RBP13.58□□□□□ -0.23
HMGB1-202ENST00000339872 ZNF473Q8WTR7 871 aaKnown RBP13.58□□□□□ -0.23
HMGB1-202ENST00000339872 MUC3BQ9H195 1237 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 CCDC134Q9H6E4 229 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 VPS45Q9NRW7 570 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 CFAP97Q9P2B7 532 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 TBC1D30Q9Y2I9 924 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 SH3BP1Q9Y3L3 701 aa13.58□□□□□ -0.23
HMGB1-202ENST00000339872 C5orf67F2Z3F1 127 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 H0Y626 953 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 MUSKO15146 869 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 GJB3O75712 270 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 C1RP00736 705 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 PYGBP11216 843 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 NMBRP28336 390 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 SLC18A1P54219 525 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 WDR4P57081 412 aaKnown RBP13.58□□□□□ -0.24
HMGB1-202ENST00000339872 SLC7A9P82251 487 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 NAB1Q13506 487 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 PCID2Q5JVF3 399 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 MROH9Q5TGP6 573 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 RNF219Q5W0B1 726 aaPredicted RBP13.58□□□□□ -0.24
HMGB1-202ENST00000339872 FAM109BQ6ICB4 259 aaPredicted RBP13.58□□□□□ -0.24
HMGB1-202ENST00000339872 FOXR1Q6PIV2 292 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 RANBP10Q6VN20 620 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 PACS1Q6VY07 963 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 PPHLN1Q8NEY8 458 aaKnown RBP13.58□□□□□ -0.24
HMGB1-202ENST00000339872 ARRDC2Q8TBH0 407 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 BHMTQ93088 406 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 ALKBH8Q96BT7 664 aaKnown RBP13.58□□□□□ -0.24
HMGB1-202ENST00000339872 MTBPQ96DY7 904 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 ZNF778Q96MU6 729 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 SEMA3CQ99985 751 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 TXNDC16Q9P2K2 825 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 UBA2Q9UBT2 640 aaPredicted RBP13.58□□□□□ -0.24
HMGB1-202ENST00000339872 PSAT1Q9Y617 370 aa13.58□□□□□ -0.24
HMGB1-202ENST00000339872 CBX4O00257 560 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 KDELR3O43731 214 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 CA3P07451 260 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 CCR2P41597 374 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 CCT5P48643 541 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 CAMK1Q14012 370 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 C9orf50Q5SZB4 431 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 BBS5Q8N3I7 341 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 BANPQ8N9N5 519 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 DENND1AQ8TEH3 1009 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 CKAP2Q8WWK9 683 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 TMA16Q96EY4 203 aaKnown RBP13.57□□□□□ -0.24
HMGB1-202ENST00000339872 ZNF317Q96PQ6 595 aaPredicted RBP13.57□□□□□ -0.24
HMGB1-202ENST00000339872 KIFC1Q9BW19 673 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 SMG9Q9H0W8 520 aaKnown RBP13.57□□□□□ -0.24
HMGB1-202ENST00000339872 C20orf96Q9NUD7 363 aaPredicted RBP13.57□□□□□ -0.24
HMGB1-202ENST00000339872 ZWINTO95229 277 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 EPCAMP16422 314 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 IL9RQ01113 521 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 SEPT6Q14141 434 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 IHHQ14623 411 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms