RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 HIRAP54198 1017 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 TGFB2P61812 414 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 C11orf88Q6PI97 169 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 OR8H2Q8N162 312 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 PROX1Q92786 737 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 RBM4BQ9BQ04 359 aaKnown RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 SH2D3AQ9BRG2 576 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 RBM4Q9BWF3 364 aaKnown RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 SPATC1LQ9H0A9 340 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 CDH19Q9H159 772 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 S100A14Q9HCY8 104 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 SH3BP4Q9P0V3 963 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 CDK5RAP2Q96SN8 1893 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 UGT2B11O75310 529 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 MATKP42679 507 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 TBX4P57082 545 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 ANKRD52Q8NB46 1076 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 HEXDCQ8WVB3 486 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 OPTCQ9UBM4 332 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 OR56A5P0C7T3 313 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 KLRK1P26718 216 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 NOMO3P69849 1222 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 VSIG10LQ86VR7 867 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 OXCT2Q9BYC2 517 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 VAV3Q9UKW4 847 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 DUSP12Q9UNI6 340 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 UBIAD1Q9Y5Z9 338 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 TIAM2Q8IVF5 1701 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 A0A088AWK7 358 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 B4GALT4O60513 344 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 ITGB6P18564 788 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 ZNF10P21506 573 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 CREMQ03060 361 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 STRADAQ7RTN6 431 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 TCAIMQ8N3R3 496 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 MAB21L3Q8N8X9 362 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 FIG4Q92562 907 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 CCDC167Q9P0B6 97 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 IFT80Q9P2H3 777 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 INVSQ9Y283 1065 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 OTCP00480 354 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 CYP2A6P11509 494 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 FSCN1Q16658 493 aaKnown RBP10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 BRMS1LQ5PSV4 323 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 IRF2BP1Q8IU81 584 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 CDK20Q8IZL9 346 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 TBC1D30Q9Y2I9 924 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 ENTPD5O75356 428 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 CXCR2P25025 360 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 PSMB9P28065 219 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 GRK4P32298 578 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 INTS6LQ5JSJ4 861 aaKnown RBP10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 ILDR2Q71H61 639 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 EMC1Q8N766 993 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 ACSF2Q96CM8 615 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 TINF2Q9BSI4 451 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 COPS7BQ9H9Q2 264 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 ZFYVE28Q9HCC9 887 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 ARHGEF3Q9NR81 526 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 HACL1Q9UJ83 578 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 GCATO75600 419 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 TRAP1Q12931 704 aaKnown RBP10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 MKRN4PQ13434 485 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 MON1BQ7L1V2 547 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 KRT74Q7RTS7 529 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 LRRC71Q8N4P6 559 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 PACRGLQ8N7B6 248 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 METTL6Q8TCB7 284 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 SGF29Q96ES7 293 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 LRRC4CQ9HCJ2 640 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 LPIN1Q14693 890 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 BICRALQ6AI39 1079 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 STK32CQ86UX6 486 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 HS6ST3Q8IZP7 471 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 ALG3Q92685 438 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 QKIQ96PU8 341 aaKnown RBP eCLIP10.4□□□□□ -0.741e-7■■■■■ 38.2
CCDC88A-202ENST00000336838 PRDM8Q9NQV8 689 aa10.4□□□□□ -0.74
CCDC88A-202ENST00000336838 MYBL2P10244 700 aa10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 FUT11Q495W5 492 aa10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 CWF19L1Q69YN2 538 aaKnown RBP10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC44A2Q8IWA5 706 aaPredicted RBP10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 ZBED2Q9BTP6 218 aa10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 NUAK2Q9H093 628 aa10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 SAE1Q9UBE0 346 aaPredicted RBP10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 PKD1L3Q7Z443 1732 aa10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 AKAP11Q9UKA4 1901 aa10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 PRMT5O14744 637 aaPredicted RBP10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 RFTN2Q52LD8 501 aaPredicted RBP10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 TSEN34Q9BSV6 310 aaKnown RBP10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 SAMD4AQ9UPU9 718 aaKnown RBP10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 CLCA2Q9UQC9 943 aa10.4□□□□□ -0.75
CCDC88A-202ENST00000336838 RCCD1A6NED2 376 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 HS6ST1O60243 411 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 S100A3P33764 101 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 COX10Q12887 443 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 PHKG1Q16816 387 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 FAM228AQ86W67 206 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 CENPIQ92674 756 aaPredicted RBP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 AASDHPPTQ9NRN7 309 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 H3BRB1 525 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms