RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 KLHL12Q53G59 568 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 DNERQ8NFT8 737 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 HELQQ8TDG4 1101 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 REXO5Q96IC2 774 aaKnown RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 BTBD10Q9BSF8 475 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 F8VP50 259 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 PIAS1O75925 651 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 FAM153BP0C7A2 387 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 DGKAP23743 735 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 MAXP61244 160 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 FAM153CQ494X1 144 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 PRMT9Q6P2P2 845 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 CRTC3Q6UUV7 619 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 PEG10Q86TG7 708 aaKnown RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 OR6K2Q8NGY2 324 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 NFASCO94856 1347 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 RARAP10276 462 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 C1QBPQ07021 282 aaKnown RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 SCRN3Q0VDG4 424 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 PAGE2BQ5JRK9 111 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 ZNF697Q5TEC3 545 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 EIF3MQ7L2H7 374 aaKnown RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 POLNQ7Z5Q5 900 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 DNAJB14Q8TBM8 379 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 RERGQ96A58 199 aaPredicted RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 THAP1Q9NVV9 213 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 CMTM6Q9NX76 183 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 MSRAQ9UJ68 235 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 RAB23Q9ULC3 237 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 TRBV23OR9-2A0A075B6M9 112 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 CCDC85CA6NKD9 419 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 CCDC166P0CW27 439 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 UQCRBP14927 111 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 ATP5C1P36542 298 aaKnown RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 CCT3P49368 545 aaKnown RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 PPP4CP60510 307 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 PMF1Q6P1K2 205 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 ZDHHC13Q8IUH4 622 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 ADGRG2Q8IZP9 1017 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 OR52L1Q8NGH7 329 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 PIGKQ92643 395 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 PRRG4Q9BZD6 226 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 DDX20Q9UHI6 824 aaKnown RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 TPRKBQ9Y3C4 175 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 ABHD14A-ACY1A0A1B0GW23 586 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 NT5C1B-RDH14C9J2C7 533 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 VEGFAP15692 232 aaPredicted RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 ZBTB46Q86UZ6 589 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 DMGDHQ9UI17 866 aaKnown RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 ANKRD6Q9Y2G4 727 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 A0A087X1B8 175 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 TUFMP49411 452 aaKnown RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 CCNHP51946 323 aaPredicted RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 HYIQ5T013 277 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 RASAL3Q86YV0 1011 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 HIPK1Q86Z02 1210 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 KIAA0895Q8NCT3 520 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 MAGEC3Q8TD91 643 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 ACAT2Q9BWD1 397 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 ZNF180Q9UJW8 692 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 MRPS23Q9Y3D9 190 aaKnown RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 POLR1AO95602 1720 aaPredicted RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 FKBP6O75344 327 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 VIL1P09327 827 aaKnown RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 HDCP19113 662 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 XKR6Q5GH73 641 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 GMCL1Q96IK5 515 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 VPS35Q96QK1 796 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 EPB41L1Q9H4G0 881 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 ACP6Q9NPH0 428 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 OR12D3Q9UGF7 316 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 PRELID1Q9Y255 219 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 ALKQ9UM73 1620 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 SLITRK3O94933 977 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 RFX5P48382 616 aaPredicted RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 DLG4P78352 724 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 ACAP1Q15027 740 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 CEP68Q76N32 757 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 KRT73Q86Y46 540 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 ATP6V1C2Q8NEY4 427 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 SLC16A10Q8TF71 515 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 MLPHQ9BV36 600 aaPredicted RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 MRPL9Q9BYD2 267 aaKnown RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 GPN3Q9UHW5 284 aaPredicted RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 MYPNQ86TC9 1320 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 PSIP1O75475 530 aaKnown RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 RBMXL2O75526 392 aaKnown RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 SEMA3DO95025 777 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 NR2F1P10589 423 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 PAX3P23760 479 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 ABCC13Q9NSE7 274 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 ALKBH4Q9NXW9 302 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 ZNF222Q9UK12 451 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 TRHDEQ9UKU6 1024 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 CLEC4AQ9UMR7 237 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 PCDHGA3Q9Y5H0 932 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 LIN7AO14910 233 aaPredicted RBP12.75□□□□□ -0.37
SDC3-201ENST00000336798 RCVRNP35243 200 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 C21orf59P57076 290 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 ZNF268Q14587 947 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms