RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 DHCR24Q15392 516 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 LY6G5CQ5SRR4 150 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 FAM182AQ5T1J6 154 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 STEAP4Q687X5 459 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 RANBP10Q6VN20 620 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 TPGS1Q6ZTW0 290 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 CYS1Q717R9 158 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 ZNF354CQ86Y25 554 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 SMRP1Q8NCR6 262 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 FBXO36Q8NEA4 188 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 PYROXD1Q8WU10 500 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 SUSD6Q92537 303 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 C9orf72Q96LT7 481 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 EBNA1BP2Q99848 306 aaKnown RBP15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 FAM83CQ9BQN1 747 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 BBS2Q9BXC9 721 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 ROPN1BQ9BZX4 212 aaPredicted RBP15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 LINC00597Q9H2U6 94 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 ROPN1Q9HAT0 212 aaPredicted RBP15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 DUS2Q9NX74 493 aaKnown RBP15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 INTS6Q9UL03 887 aaKnown RBP15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 CLEC4EQ9ULY5 219 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 CDH23Q9H251 3354 aa15.15■□□□□ 0.02
CCDC88C-202ENST00000334448 A0A087WUV0 522 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 SDR42E2A6NKP2 422 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 HEPACAM2A8MVW5 462 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 CBX4O00257 560 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 OPA1O60313 960 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 SNAP91O60641 907 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 TMCC1O94876 653 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 NFATC1O95644 943 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 TYRP14679 529 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 HLA-FP30511 346 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 CD70P32970 193 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 VIPR2P41587 438 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 ELK3P41970 407 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 GRIA1P42261 906 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 CSNK1DP48730 415 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 NPY2RP49146 381 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 SERPINH1P50454 418 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 GPX6P59796 221 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 SKOR1P84550 965 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 MLLT1Q03111 559 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 DLX2Q07687 328 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 CDH17Q12864 832 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 STAT4Q14765 748 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 RASA2Q15283 850 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 CYTH1Q15438 398 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 UBAP2Q5T6F2 1119 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 DENND5AQ6IQ26 1287 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 ETFBKMTQ8IXQ9 262 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 SPATA22Q8NHS9 363 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 ATP2A3Q93084 1043 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 ASIC4Q96FT7 647 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 MRGPRX2Q96LB1 330 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 MYADMQ96S97 322 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 RUFY1Q96T51 708 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 TBL1YQ9BQ87 522 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 CINPQ9BW66 212 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 PLAC1Q9HBJ0 212 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 ABCB8Q9NUT2 735 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 LHX3Q9UBR4 397 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 COLQQ9Y215 455 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 HS3ST2Q9Y278 367 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 SLC27A6Q9Y2P4 619 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 DENND4AQ7Z401 1863 aa15.14■□□□□ 0.01
CCDC88C-202ENST00000334448 NEDD8-MDP1E9PL57 170 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 AVILO75366 819 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 ACSL3O95573 720 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 MT-CYBP00156 380 aaPredicted RBP15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 ADH5P11766 374 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 PABPC1P11940 636 aaKnown RBP15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 PHBP35232 272 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 WNT3AP56704 352 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 SULT2A1Q06520 285 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 IHHQ14623 411 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 PITRM1Q5JRX3 1037 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 ASTLQ6HA08 431 aaPredicted RBP15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 ZNF449Q6P9G9 518 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 TDRPQ86YL5 185 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 IGDCC3Q8IVU1 814 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 MFSD6LQ8IWD5 586 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 APCDD1Q8J025 514 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 OR52K1Q8NGK4 314 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 WFIKKN2Q8TEU8 576 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 PTCD2Q8WV60 388 aaKnown RBP15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 TTC17Q96AE7 1141 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 ISG20Q96AZ6 181 aaKnown RBP15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 ELSPBP1Q96BH3 223 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 FEM1CQ96JP0 617 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 NUDCD1Q96RS6 583 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 SEMA3CQ99985 751 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 APOL5Q9BWW9 433 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 IL22Q9GZX6 179 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 ACSS3Q9H6R3 686 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 ZFP14Q9HCL3 533 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 THG1LQ9NWX6 298 aaKnown RBP15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 CLDND1Q9NY35 253 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 PLK2Q9NYY3 685 aa15.13■□□□□ 0.01
CCDC88C-202ENST00000334448 BFARQ9NZS9 450 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms