RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 LIASO43766 372 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 LSM8O95777 96 aaKnown RBP11.06□□□□□ -0.64
LSM3-201ENST00000306024 BCL10O95999 233 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 SMIM18P0DKX4 95 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 THRAP10827 490 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 SPIDRQ14159 915 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 Q6ZNX1 250 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 SLC15A3Q8IY34 581 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 MCOLN2Q8IZK6 566 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 ADCY4Q8NFM4 1077 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 CYGBQ8WWM9 190 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 KCNN1Q92952 543 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 SERAC1Q96JX3 654 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 ZNF518BQ9C0D4 1074 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 PCSK1NQ9UHG2 260 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 E2F8A0AVK6 867 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 E5RJQ4 531 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 ENPP3O14638 875 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 AKAP10O43572 662 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 FAM189A1O60320 539 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 LYPLA1O75608 230 aaPredicted RBP11.06□□□□□ -0.64
LSM3-201ENST00000306024 BCAT1P54687 386 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 RPL26P61254 145 aaKnown RBP11.06□□□□□ -0.64
LSM3-201ENST00000306024 ANKDD1AQ495B1 522 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 FASTKD1Q53R41 847 aaKnown RBP11.06□□□□□ -0.64
LSM3-201ENST00000306024 PTAR1Q7Z6K3 402 aaPredicted RBP11.06□□□□□ -0.64
LSM3-201ENST00000306024 DCP1BQ8IZD4 617 aaKnown RBP11.06□□□□□ -0.64
LSM3-201ENST00000306024 TMEM86AQ8N2M4 240 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 CALML6Q8TD86 181 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 DHRS1Q96LJ7 313 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 UROC1Q96N76 676 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 KCNK13Q9HB14 408 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 MIOSQ9NXC5 875 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 NENFQ9UMX5 172 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 GOLGA8QA0A0J9YX86 632 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 GOLGA8OA6NCC3 632 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 CCDC85CA6NKD9 419 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 GOLGA8NF8WBI6 632 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 H3BNX3 289 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 PTGESO14684 152 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 SERPINB7O75635 380 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 CPA3P15088 417 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 PTPN1P18031 435 aaKnown RBP11.06□□□□□ -0.64
LSM3-201ENST00000306024 KCNA4P22459 653 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 SDC4P31431 198 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 AFF1P51825 1210 aaKnown RBP11.06□□□□□ -0.64
LSM3-201ENST00000306024 TMC5Q6UXY8 1006 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 ZBTB49Q6ZSB9 765 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 MYO1HQ8N1T3 1032 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 FAM71DQ8N9W8 422 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 TFAP2BQ92481 460 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 CD101Q93033 1021 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 TAMM41Q96BW9 452 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 C7orf26Q96N11 449 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 CXCL16Q9H2A7 254 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 TBC1D13Q9NVG8 400 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 HMGXB4Q9UGU5 601 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 IP6K2Q9UHH9 426 aa11.06□□□□□ -0.64
LSM3-201ENST00000306024 NOCTQ9UK39 431 aaKnown RBP11.06□□□□□ -0.64
LSM3-201ENST00000306024 CSF2RAP15509 400 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 PDGFRAP16234 1089 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 ACO1P21399 889 aaKnown RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 TKTP29401 623 aaKnown RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 ELAVL2Q12926 359 aaKnown RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 GK3PQ14409 553 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 ALLCQ8N6M5 410 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 TOP6BLQ8N6T0 577 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 B3GALNT2Q8NCR0 500 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 RGS18Q9NS28 235 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 CARD8Q9Y2G2 431 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 CST8O60676 142 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 ATP5BP06576 529 aaKnown RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 COL6A2P12110 1019 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 COX4I1P13073 169 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 SYN1P17600 705 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 DNAJB2P25686 324 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 SERPINB1P30740 379 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 PBX3P40426 434 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 SLC1A6P48664 564 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 MAP3K7CLP57077 242 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 TAS2R40P59535 323 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 EIF3EP60228 445 aaKnown RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 NOMO3P69849 1222 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 WASHC5Q12768 1159 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 MAPRE1Q15691 268 aaKnown RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 SOWAHAQ2M3V2 549 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 C16orf46Q6P387 395 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 SNX32Q86XE0 403 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 NPAS4Q8IUM7 802 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 FAM47BQ8NA70 645 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 KYQ8NBH2 561 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 SLC4A11Q8NBS3 891 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 FEZF2Q8TBJ5 459 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 PDCD6IPQ8WUM4 868 aaKnown RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 PGLYRP2Q96PD5 576 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 TWNKQ96RR1 684 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 HTATIP2Q9BUP3 242 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 MCOLN1Q9GZU1 580 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 CLK4Q9HAZ1 481 aaKnown RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 PNPLA3Q9NST1 481 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms