RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 HEATR6Q6AI08 1181 aaKnown RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 OR6B2Q6IFH4 312 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 MFSD7Q6UXD7 560 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 AQP12AQ8IXF9 295 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 NAT8LQ8N9F0 302 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 OR8H1Q8NGG4 311 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 UTP4Q969X6 686 aaKnown RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 KREMEN1Q96MU8 473 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 KLHL8Q9P2G9 620 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 TRHDEQ9UKU6 1024 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 STAP1Q9ULZ2 295 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 GPC6Q9Y625 555 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 CCDC85CA6NKD9 419 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 OGTO15294 1046 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 RGS10O43665 173 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 ASS1P00966 412 aaKnown RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 UMPSP11172 480 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 PSMA4P25789 261 aaKnown RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 SLC26A3P40879 764 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 CDKN2BP42772 138 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 ARHGDIBP52566 201 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 PTPN5P54829 565 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 FOXM1Q08050 763 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 CHI3L2Q15782 390 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 SWI5Q1ZZU3 235 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 ANKS3Q6ZW76 656 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 KCTD1Q719H9 257 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 OR8H3Q8N146 312 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 PMM1Q92871 262 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 CAPN10Q9HC96 672 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 TCF7L2Q9NQB0 619 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 PCDHB12Q9Y5F1 795 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 SNX8Q9Y5X2 465 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 IRS2Q9Y4H2 1338 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 AHDC1Q5TGY3 1603 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 PNMA8CA0A1B0GUJ8 204 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 EFCAB10A6NFE3 127 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 M0QZ92 97 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 MRPS14O60783 128 aaKnown RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 NOS1APO75052 506 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 OR7A10O76100 309 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 FSHRP23945 695 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 SMCO1Q147U7 214 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 AGERQ15109 404 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 SMU1Q2TAY7 513 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 SLC9A4Q6AI14 798 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 C15orf39Q6ZRI6 1047 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 SCAIQ8N9R8 606 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 GATAD2BQ8WXI9 593 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 FIZ1Q96SL8 496 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 ARHGAP28Q9P2N2 729 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 CDYLQ9Y232 598 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 TIMM8BQ9Y5J9 83 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 DLEC1Q9Y238 1755 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 ARHGEF33A8MVX0 844 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 GSTM1P09488 218 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 KDELR1P24390 212 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 CRKP46108 304 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 NPTX2P47972 431 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 AP1S1P61966 158 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 FAAP100Q0VG06 881 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 GRIK2Q13002 908 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 NCOA4Q13772 614 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 PABPC1LQ4VXU2 614 aaKnown RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 IER5Q5VY09 327 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 BHLHB9Q6PI77 547 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 ZNF410Q86VK4 478 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 CMASQ8NFW8 434 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 ZNF606Q8WXB4 792 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 CPT1BQ92523 772 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 CIDECQ96AQ7 238 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 FAM213AQ9BRX8 229 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 DGCR6LQ9BY27 220 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 RHOBTB2Q9BYZ6 727 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 GRIP2Q9C0E4 1043 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 SLC7A5P2Q9GIP4 190 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 GPR88Q9GZN0 384 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 XKR8Q9H6D3 395 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 MOV10Q9HCE1 1003 aaKnown RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 TRNAU1APQ9NX07 287 aaKnown RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 NOTOA8MTQ0 251 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 MAP3K13O43283 966 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 SNNO75324 88 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 KDM4BO94953 1096 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 VEGFAP15692 232 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 MAGP20916 626 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 GPD1P21695 349 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 HOXD13P35453 343 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 GRK3P35626 688 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 MARCKSL1P49006 195 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 ATP4BP51164 291 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 SLC1A5Q15758 541 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 ZNF280DQ6N043 979 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 LRRC8DQ7L1W4 858 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 FAM83AQ86UY5 434 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 LDHDQ86WU2 507 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 CCDC185Q8N715 623 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 MOSPD2Q8NHP6 518 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 DCAKDQ8WVC6 231 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 DDX1Q92499 740 aaKnown RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms