RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 RNF39Q9H2S5 420 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 DNAJC28Q9NX36 388 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 PRORSD1PA6NEY8 169 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 DLX3O60479 287 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 CDH2P19022 906 aaPredicted RBP13.18□□□□□ -0.3
SNX1-201ENST00000261889 ME2P23368 584 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 GABRB3P28472 473 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 RGS2P41220 211 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 RPL14P50914 215 aaKnown RBP13.18□□□□□ -0.3
SNX1-201ENST00000261889 PIGGQ5H8A4 983 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 LDLRAD1Q5T700 205 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 OGFOD2Q6N063 350 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 SCIMPQ6UWF3 145 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 CDCA5Q96FF9 252 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 FBXL20Q96IG2 436 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 ZNF670Q9BS34 389 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 USP22Q9UPT9 525 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 ARHGAP10A1A4S6 786 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 RGSL1A5PLK6 1076 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 DFFAO00273 331 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 SOCS2O14508 198 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 NDC80O14777 642 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 TMCC1O94876 653 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 SLC4A1P02730 911 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 HARS2P49590 506 aaKnown RBP13.17□□□□□ -0.3
SNX1-201ENST00000261889 MAP3K7CLP57077 242 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 C1QTNF8P60827 252 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 NAA20P61599 178 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 NEDD8Q15843 81 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 MAP3K21Q5TCX8 1036 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 METTL7BQ6UX53 244 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 PIGZQ86VD9 579 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 ZNF410Q86VK4 478 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 SLC35F5Q8WV83 523 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 CYGBQ8WWM9 190 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 RTKNQ9BST9 563 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 HAUS8Q9BT25 410 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 FZD8Q9H461 694 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 RRAGCQ9HB90 399 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 ZDHHC7Q9NXF8 308 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 TBC1D30Q9Y2I9 924 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 MAN1A2O60476 641 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 NCK1P16333 377 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 ERCC2P18074 760 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 CD247P20963 164 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 GRK2P25098 689 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 APLP1P51693 650 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 SLC5A3P53794 718 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 MCCD1P59942 119 aaPredicted RBP13.17□□□□□ -0.3
SNX1-201ENST00000261889 MXD4Q14582 209 aaPredicted RBP13.17□□□□□ -0.3
SNX1-201ENST00000261889 FUT11Q495W5 492 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 RBM20Q5T481 1227 aaKnown RBP13.17□□□□□ -0.3
SNX1-201ENST00000261889 ESRP1Q6NXG1 681 aaKnown RBP13.17□□□□□ -0.3
SNX1-201ENST00000261889 HERC6Q8IVU3 1022 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 LSMEM2Q8N112 164 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 JADE3Q92613 823 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 CDYLQ9Y232 598 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 LOXHD1Q8IVV2 1947 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 ZCWPW2A0A1B0GU75 182 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 TCAF2A6NFQ2 919 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 MATN2O00339 956 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 EEF2KO00418 725 aaKnown RBP13.17□□□□□ -0.3
SNX1-201ENST00000261889 HDAC3O15379 428 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 CACNB2Q08289 660 aaPredicted RBP13.17□□□□□ -0.3
SNX1-201ENST00000261889 TBCCQ15814 346 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 CANT1Q8WVQ1 401 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 MLPHQ9BV36 600 aaPredicted RBP13.17□□□□□ -0.3
SNX1-201ENST00000261889 FRMD8P1Q9BZ68 369 aaPredicted RBP13.17□□□□□ -0.3
SNX1-201ENST00000261889 EPS8L2Q9H6S3 715 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 CEPT1Q9Y6K0 416 aa13.17□□□□□ -0.3
SNX1-201ENST00000261889 PRRC2BQ5JSZ5 2229 aaKnown RBP13.16□□□□□ -0.3
SNX1-201ENST00000261889 TSPAN3O60637 253 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 TNFAIP8O95379 198 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 IL1BP01584 269 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 AHSGP02765 367 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 MTHFD1P11586 935 aaKnown RBP13.16□□□□□ -0.3
SNX1-201ENST00000261889 GLDCP23378 1020 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 SPRP35270 261 aaPredicted RBP13.16□□□□□ -0.3
SNX1-201ENST00000261889 AP3M2P53677 418 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 BCAT1P54687 386 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 PSME3P61289 254 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 ZIK1Q3SY52 487 aaPredicted RBP13.16□□□□□ -0.3
SNX1-201ENST00000261889 PPP1R2P3Q6NXS1 205 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 ELMO2Q96JJ3 720 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 OSMRQ99650 979 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 RBM38Q9H0Z9 239 aaKnown RBP13.16□□□□□ -0.3
SNX1-201ENST00000261889 POMKQ9H5K3 350 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 BFARQ9NZS9 450 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 CSADQ9Y600 493 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 ARID2Q68CP9 1835 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 PGK1P00558 417 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 PROZP22891 400 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 PTPN3P26045 913 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 CD68P34810 354 aaPredicted RBP13.16□□□□□ -0.3
SNX1-201ENST00000261889 PPARGP37231 505 aaPredicted RBP13.16□□□□□ -0.3
SNX1-201ENST00000261889 SERPINB8P50452 374 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 SLC7A2P52569 658 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 PTPRCAPQ14761 206 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 DPYSL2Q16555 572 aa13.16□□□□□ -0.3
SNX1-201ENST00000261889 GPR107Q5VW38 600 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms