RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 SETD3Q86TU7 594 aaPredicted RBP16.65■□□□□ 0.26
HOXD3-201ENST00000249440 CNTN4Q8IWV2 1026 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 ATPAF2Q8N5M1 289 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 KYQ8NBH2 561 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 SPATA22Q8NHS9 363 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 GDPD5Q8WTR4 605 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 KCTD4Q8WVF5 259 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 STON2Q8WXE9 905 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 MYLPFQ96A32 169 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 FCRL5Q96RD9 977 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 CCDC28BQ9BUN5 200 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 TRIM62Q9BVG3 475 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 EBF3Q9H4W6 596 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 AIM2O14862 343 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 ZCCHC18P0CG32 403 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 RAG1P15918 1043 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 HOXC8P31273 242 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 RPL9P32969 192 aaKnown RBP16.65■□□□□ 0.26
HOXD3-201ENST00000249440 NUDT2P50583 147 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 MED21Q13503 144 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 LPCAT4Q643R3 524 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 NAIF1Q69YI7 327 aaPredicted RBP16.65■□□□□ 0.26
HOXD3-201ENST00000249440 LRRC8EQ6NSJ5 796 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 EFCAB3Q8N7B9 438 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 PPHLN1Q8NEY8 458 aaKnown RBP16.65■□□□□ 0.26
HOXD3-201ENST00000249440 DQX1Q8TE96 717 aaKnown RBP16.65■□□□□ 0.26
HOXD3-201ENST00000249440 RHOBTB2Q9BYZ6 727 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 FAM192AQ9GZU8 254 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 MIOSQ9NXC5 875 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 FLRT1Q9NZU1 646 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 STK39Q9UEW8 545 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 ST3GAL5Q9UNP4 418 aa16.65■□□□□ 0.26
HOXD3-201ENST00000249440 VAPBO95292 243 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 MT-CYBP00156 380 aaPredicted RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 STMN1P16949 149 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 GABRB3P28472 473 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 PPARGP37231 505 aaPredicted RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 AVPR1AP37288 418 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 RAB10P61026 200 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 POU6F1Q14863 301 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 MORN1Q5T089 497 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 POTEHQ6S545 545 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 CCDC117Q8IWD4 279 aaPredicted RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 CENPLQ8N0S6 344 aaPredicted RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 SCML4Q8N228 414 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 CPSF7Q8N684 471 aaKnown RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 IPMKQ8NFU5 416 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 ZNF483Q8TF39 744 aaPredicted RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 PDCD6IPQ8WUM4 868 aaKnown RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 MOCOSQ96EN8 888 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 PPP1R36Q96LQ0 422 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 PPP1R2P1Q96PQ5 205 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 DDX50Q9BQ39 737 aaKnown RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 NUF2Q9BZD4 464 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 SIK2Q9H0K1 926 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 ZDHHC2Q9UIJ5 367 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 CDYLQ9Y232 598 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 Q9Y3F1 56 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 ARL5CA6NH57 179 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 TARM1B6A8C7 271 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 BDNFP23560 247 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 YY1P25490 414 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 MRPS6P82932 125 aaKnown RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 CYLC2Q14093 348 aaPredicted RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 TRIP10Q15642 601 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 TIGD5Q53EQ6 642 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 ARHGAP36Q6ZRI8 547 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 SNX32Q86XE0 403 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 SLC41A1Q8IVJ1 513 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 LZTR1Q8N653 840 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 PHC3Q8NDX5 983 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 PTCD2Q8WV60 388 aaKnown RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 GBP5Q96PP8 586 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 TUBGCP5Q96RT8 1024 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 ACBD6Q9BR61 282 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 UBE2OQ9C0C9 1292 aaKnown RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 GLOD4Q9HC38 313 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 DMAP1Q9NPF5 467 aaPredicted RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 CHST12Q9NRB3 414 aa16.64■□□□□ 0.25
HOXD3-201ENST00000249440 ABT1Q9ULW3 272 aaKnown RBP16.64■□□□□ 0.25
HOXD3-201ENST00000249440 CASTOR2A6NHX0 329 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 CASQ2O14958 399 aaPredicted RBP16.63■□□□□ 0.25
HOXD3-201ENST00000249440 MAP3K13O43283 966 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 GRID2O43424 1007 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 ODC1P11926 461 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 UQCRBP14927 111 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 PEX2P28328 305 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 CTBP1Q13363 440 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 UPP1Q16831 310 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 SFT2D3Q587I9 215 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 FAM171BQ6P995 826 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 SLC30A9Q6PML9 568 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 DENND6AQ8IWF6 608 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 LPPQ93052 612 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 IL12RB2Q99665 862 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 CATSPERBQ9H7T0 1116 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 PAPOLBQ9NRJ5 636 aaKnown RBP16.63■□□□□ 0.25
HOXD3-201ENST00000249440 ARHGEF38Q9NXL2 777 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 XPR1Q9UBH6 696 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 GIT1Q9Y2X7 761 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms