RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 IQSEC1Q6DN90 963 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PAOXQ6QHF9 649 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 GSTCDQ8NEC7 633 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 OR56A4Q8NGH8 313 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CAMKK2Q96RR4 588 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 LXNQ9BS40 222 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CATSPERZQ9NTU4 200 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 LMCD1Q9NZU5 365 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 HS6ST1O60243 411 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CRTAMO95727 393 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ATP5F1P24539 256 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SLC6A4P31645 630 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PTPN7P35236 360 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CCNFP41002 786 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 RBP5P82980 135 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TAGLNQ01995 201 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 BST2Q10589 180 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 MERTKQ12866 999 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CUL2Q13617 745 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 STARD3Q14849 445 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF746Q6NUN9 644 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TMC7Q7Z402 723 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ATPAF2Q8N5M1 289 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SLC35C1Q96A29 364 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 DCP1AQ9NPI6 582 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TOR4AQ9NXH8 423 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ARMCX1Q9P291 453 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM59LQ9UK28 342 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TULP4Q9NRJ4 1543 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ERBB3P21860 1342 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 MYPNQ86TC9 1320 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 DENND3A2RUS2 1198 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ZSCAN5CA6NGD5 496 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 AIREO43918 545 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 LDOC1O95751 146 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PGDP52209 483 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 AQP4P55087 323 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 RAB5BP61020 215 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SH3BP5LQ7L8J4 393 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PID1Q7Z2X4 250 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SLFN11Q7Z7L1 901 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CHERPQ8IWX8 916 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 RAB42Q8N4Z0 105 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 LRRC57Q8N9N7 239 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TWNKQ96RR1 684 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 DUSP9Q99956 384 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 AGO2Q9UKV8 859 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 MROH2AA6NES4 1674 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SPDYE2BA6NHP3 402 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 M0QYV0 167 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 FOXN3O00409 490 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 EEF2KO00418 725 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TPST1O60507 370 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 RPS17P08708 135 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SPDYE6P0CI01 402 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 NUDT1P36639 197 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 GRIA1P42261 906 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 RBM34P42696 430 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 KCNA1Q09470 495 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 NRF1Q16656 503 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ACSBG2Q5FVE4 666 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 MFSD14BQ5SR56 506 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 LAYNQ6UX15 382 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TAB3Q8N5C8 712 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 LILRB4Q8NHJ6 448 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ACTL9Q8TC94 416 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 NKD2Q969F2 451 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 LGR6Q9HBX8 967 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 UBQLN1Q9UMX0 589 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 WRBO00258 174 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CCRL2O00421 344 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 FGFR2P21802 821 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CD72P21854 359 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CDK8P49336 464 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TPI1P60174 286 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PEG10Q86TG7 708 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 NOP9Q86U38 636 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PLCZ1Q86YW0 608 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 KBTBD2Q8IY47 623 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 LZTR1Q8N653 840 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 FAM71DQ8N9W8 422 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 EBF3Q9H4W6 596 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PCIF1Q9H4Z3 704 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 JPH1Q9HDC5 661 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 AGPAT3Q9NRZ7 376 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM2Q9UHN6 1383 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF804BA4D1E1 1349 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 GUCA1CO95843 209 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 HIST1H2AGP0C0S8 130 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 GYS1P13807 737 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 HIST1H2ADP20671 130 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 BTDP43251 543 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 S100A12P80511 92 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SLC25A3Q00325 362 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 GK3PQ14409 553 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SKIV2LQ15477 1246 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ZCCHC8Q6NZY4 707 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CXXC5Q7LFL8 322 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 HIST1H2AHQ96KK5 128 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 HIST1H2AJQ99878 128 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms