RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 HIST3H2AQ7L7L0 130 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 HDDC2Q7Z4H3 204 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ADSSL1Q8N142 457 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ZNF461Q8TAF7 563 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 NCSTNQ92542 709 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 HIST1H2ACQ93077 130 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ZDHHC12Q96GR4 267 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ACBD6Q9BR61 282 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 SLC39A8Q9C0K1 460 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 CDT1Q9H211 546 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ELAC1Q9H777 363 aaKnown RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 PAIP2BQ9ULR5 123 aaKnown RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 AP4E1Q9UPM8 1137 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 SLIT3O75094 1523 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 LSM8O95777 96 aaKnown RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 STAU1O95793 577 aaKnown RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 PAEPP09466 180 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 NTSR1P30989 418 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 TNFRSF4P43489 277 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 DEFA1P59665 94 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 DEFA3P59666 94 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 FOXK1P85037 733 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 SCIMPQ6UWF3 145 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ELMO1Q92556 727 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 PURBQ96QR8 312 aaKnown RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ACO2Q99798 780 aaKnown RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 CBWD1Q9BRT8 395 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 PNMA8BQ9ULN7 279 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ATP8A1Q9Y2Q0 1164 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 YIPF1Q9Y548 306 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 RIPK3Q9Y572 518 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 E2F6O75461 281 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 STBD1O95210 358 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ATG7O95352 703 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 CYP3A4P08684 503 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 CD63P08962 238 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 RFX5P48382 616 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 CLK2P49760 499 aaKnown RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ARHGAP8P85298 464 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 FAM83EQ2M2I3 478 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 PRICKLE2Q7Z3G6 844 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 SKAP1Q86WV1 359 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 AHI1Q8N157 1196 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 PPM1NQ8N819 430 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ATXN2LQ8WWM7 1075 aaKnown RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 PPWD1Q96BP3 646 aaKnown RBP5.09□□□□□ -1.59
SCN1A-218ENST00000640036 MTMR8Q96EF0 704 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 NRDE2Q9H7Z3 1164 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 RCOR1Q9UKL0 485 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 ZNF232Q9UNY5 417 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 SEC16AO15027 2179 aa5.09□□□□□ -1.59
SCN1A-218ENST00000640036 IRAK2O43187 625 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 KLHL18O94889 574 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 TAL1P17542 331 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-218ENST00000640036 PBX3P40426 434 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 ACTR1BP42025 376 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 PRIM2P49643 509 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 ACTR1AP61163 376 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 PLOD1Q02809 727 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-218ENST00000640036 IKBIPQ70UQ0 350 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 RTL10Q7L3V2 364 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 CBWD2Q8IUF1 395 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 TMEM126BQ8IUX1 230 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 LRRC49Q8IUZ0 686 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 ADAMTS19Q8TE59 1207 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 LCN9Q8WX39 176 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 IGSF21Q96ID5 467 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 ACOX2Q99424 681 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 RNF39Q9H2S5 420 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 KLHL31Q9H511 634 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 ASB8Q9H765 288 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 C10orf88Q9H8K7 445 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 TRPC4Q9UBN4 977 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 POU2F3Q9UKI9 436 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 A0A1B0GVM2 712 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 TCAF2A6NFQ2 919 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 H0YC42 278 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 TRUB2O95900 331 aaKnown RBP5.09□□□□□ -1.6
SCN1A-218ENST00000640036 BMP4P12644 408 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 MLLT3P42568 568 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-218ENST00000640036 CLCNKBP51801 687 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 PMS2P54278 862 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 RUNX3Q13761 415 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 TRIP13Q15645 432 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-218ENST00000640036 ZKSCAN8Q15776 578 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-218ENST00000640036 C9orf57Q5W0N0 161 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 RESP18Q5W5W9 173 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 STRADAQ7RTN6 431 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 TRIM69Q86WT6 500 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 HORMAD1Q86X24 394 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 MMAAQ8IVH4 418 aaKnown RBP5.09□□□□□ -1.6
SCN1A-218ENST00000640036 ARID3BQ8IVW6 561 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-218ENST00000640036 CDK20Q8IZL9 346 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 TNIP2Q8NFZ5 429 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 KCNJ9Q92806 393 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 KLK6Q92876 244 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 ACSS2Q9NR19 701 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 FAM186AA6NE01 2351 aa5.09□□□□□ -1.6
SCN1A-218ENST00000640036 C1orf232A0A0U1RR37 186 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms