RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ZDHHC23Q8IYP9 409 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 PTGR2Q8N8N7 351 aaPredicted RBP4.45□□□□□ -1.7
CD44-239ENST00000639002 ATG16L2Q8NAA4 619 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 TMEM163Q8TC26 289 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 SLC35F5Q8WV83 523 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 TMED6Q8WW62 240 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 HERC2P3Q9BVR0 1158 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 C1QTNF4Q9BXJ3 329 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 CLPBQ9H078 707 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 DDX31Q9H8H2 851 aaKnown RBP4.45□□□□□ -1.7
CD44-239ENST00000639002 IL36RNQ9UBH0 155 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 UPB1Q9UBR1 384 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 KCND3Q9UK17 655 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 IGLV5-52A0A0A0MRZ9 124 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 TARSL2A2RTX5 802 aaKnown RBP4.44□□□□□ -1.7
CD44-239ENST00000639002 RNMTO43148 476 aaKnown RBP4.44□□□□□ -1.7
CD44-239ENST00000639002 ZNF432O94892 652 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 IGKV3-20P01619 116 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 NAGAP17050 411 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 RPS6KA2Q15349 733 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 PUM3Q15397 648 aaKnown RBP4.44□□□□□ -1.7
CD44-239ENST00000639002 KRTAP24-1Q3LI83 254 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 HSP90AB2PQ58FF8 381 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 FAM76BQ5HYJ3 339 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 SULT6B1Q6IMI4 303 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 PGBD2Q6P3X8 592 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 SPSB3Q6PJ21 355 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 CREB3L2Q70SY1 520 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 RRAGAQ7L523 313 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 SERPINA11Q86U17 422 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 ZNF329Q86UD4 541 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 WDR5BQ86VZ2 330 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 ZBTB8BQ8NAP8 495 aaPredicted RBP4.44□□□□□ -1.7
CD44-239ENST00000639002 OR14A16Q8NHC5 309 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 CPT1BQ92523 772 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 DDX23Q9BUQ8 820 aaKnown RBP4.44□□□□□ -1.7
CD44-239ENST00000639002 CADM1Q9BY67 442 aaKnown RBP4.44□□□□□ -1.7
CD44-239ENST00000639002 ACAD9Q9H845 621 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 KCNG2Q9UJ96 466 aa4.44□□□□□ -1.7
CD44-239ENST00000639002 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.43□□□□□ -1.7
CD44-239ENST00000639002 C17orf102A2RUQ5 167 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 ACKR2O00590 384 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 ASAP2O43150 1006 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 HNRNPRO43390 633 aaKnown RBP4.43□□□□□ -1.7
CD44-239ENST00000639002 ENO3P13929 434 aaPredicted RBP4.43□□□□□ -1.7
CD44-239ENST00000639002 CLCNKBP51801 687 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 MYBPC2Q14324 1141 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 PLCB4Q15147 1175 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 KLHL17Q6TDP4 642 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 TOGARAM2Q6ZUX3 1019 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 GALNT7Q86SF2 657 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 FJX1Q86VR8 437 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 SCAIQ8N9R8 606 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 OTUD7AQ8TE49 926 aaPredicted RBP4.43□□□□□ -1.7
CD44-239ENST00000639002 FAM216AQ8WUB2 273 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 NR4A3Q92570 626 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 C3orf49Q96BT1 292 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 FIZ1Q96SL8 496 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 OCIAD1Q9NX40 245 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 NDUFAF4Q9P032 175 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 LRFN1Q9P244 771 aa4.43□□□□□ -1.7
CD44-239ENST00000639002 IGHV4-28A0A0C4DH34 117 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 TMEM247A6NEH6 219 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 SKAP2O75563 359 aaPredicted RBP4.42□□□□□ -1.7
CD44-239ENST00000639002 CAMTA2O94983 1202 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 DPP6P42658 865 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 TNFAIP2Q03169 654 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 PDCLQ13371 301 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 CCSAPQ6IQ19 270 aaPredicted RBP4.42□□□□□ -1.7
CD44-239ENST00000639002 AADACL2Q6P093 401 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 H1FNTQ75WM6 255 aaPredicted RBP4.42□□□□□ -1.7
CD44-239ENST00000639002 MON1BQ7L1V2 547 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 CCDC117Q8IWD4 279 aaPredicted RBP4.42□□□□□ -1.7
CD44-239ENST00000639002 BRSK2Q8IWQ3 736 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 RBFAQ8N0V3 343 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 MIGA1Q8NAN2 632 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 GPT2Q8TD30 523 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 RTP4Q96DX8 246 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 CCDC136Q96JN2 1154 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 TRAPPC9Q96Q05 1148 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 GFM1Q96RP9 751 aaKnown RBP4.42□□□□□ -1.7
CD44-239ENST00000639002 SLC25A33Q9BSK2 321 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 MSTO1Q9BUK6 570 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 PLEKHA2Q9HB19 425 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 THAP1Q9NVV9 213 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 ICAM5Q9UMF0 924 aa4.42□□□□□ -1.7
CD44-239ENST00000639002 WDR81Q562E7 1941 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 ABHD14A-ACY1A0A1B0GW23 586 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 SYN3O14994 580 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 PLGP00747 810 aaPredicted RBP4.41□□□□□ -1.7
CD44-239ENST00000639002 SETSIPP0DME0 302 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 CYP4B1P13584 511 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 RPS6KA3P51812 740 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 TUBA1BP68363 451 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 ILF3Q12906 894 aaKnown RBP eCLIP4.41□□□□□ -1.7
CD44-239ENST00000639002 TRAF2Q12933 501 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 CTTNQ14247 550 aaKnown RBP4.41□□□□□ -1.7
CD44-239ENST00000639002 KIF19Q2TAC6 998 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 GFI1BQ5VTD9 330 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 TMEM268Q5VZI3 342 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms