RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ERN2Q76MJ5 926 aaKnown RBP19.85■□□□□ 0.77
CLN3-262ENST00000637699 ENOSF1Q7L5Y1 443 aa19.85■□□□□ 0.77
CLN3-262ENST00000637699 PTAR1Q7Z6K3 402 aaPredicted RBP19.85■□□□□ 0.77
CLN3-262ENST00000637699 ABI3BPQ7Z7G0 1075 aa19.85■□□□□ 0.77
CLN3-262ENST00000637699 SRRTQ9BXP5 876 aaKnown RBP19.85■□□□□ 0.77
CLN3-262ENST00000637699 POLR1BQ9H9Y6 1135 aa19.85■□□□□ 0.77
CLN3-262ENST00000637699 LY6G6EA0A0G2JKS1 128 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 K7ESM1 405 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 BIN1O00499 593 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 SCAMP1O15126 338 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 KLK10O43240 276 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 ENDOD1O94919 500 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 ADCY5O95622 1261 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 DUSP3P51452 185 aaPredicted RBP19.84■□□□□ 0.77
CLN3-262ENST00000637699 MARSP56192 900 aaKnown RBP19.84■□□□□ 0.77
CLN3-262ENST00000637699 MAPK8IP2Q13387 824 aaPredicted RBP19.84■□□□□ 0.77
CLN3-262ENST00000637699 C5orf22Q49AR2 442 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 OLFML1Q6UWY5 402 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 MAPK15Q8TD08 544 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 KCNE4Q8WWG9 221 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 TKTL2Q9H0I9 626 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 IL36AQ9UHA7 158 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 U3KQA8 63 aa19.84■□□□□ 0.77
CLN3-262ENST00000637699 A0A0D9SEW6 157 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 A6NNZ2 444 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 DAB1O75553 588 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 DXOO77932 396 aaKnown RBP19.83■□□□□ 0.77
CLN3-262ENST00000637699 ERBB2P04626 1255 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 GP1BAP07359 652 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 NOS2P35228 1153 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 RECQLP46063 649 aaPredicted RBP19.83■□□□□ 0.77
CLN3-262ENST00000637699 UCNP55089 124 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 ERVPABLB-1P60509 514 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 HNRNPKP61978 463 aaKnown RBP eCLIP19.83■□□□□ 0.77
CLN3-262ENST00000637699 RHDQ02161 417 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 APBA1Q02410 837 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 TMEM259Q4ZIN3 620 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 FOXR2Q6PJQ5 311 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 TFAP2DQ7Z6R9 452 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 FAM181AQ8N9Y4 354 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 C1orf131Q8NDD1 294 aaKnown RBP19.83■□□□□ 0.77
CLN3-262ENST00000637699 IFI44Q8TCB0 444 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 IFT43Q96FT9 208 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 BMFQ96LC9 184 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 DUSP23Q9BVJ7 150 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 HDAC8Q9BY41 377 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 SLC17A9Q9BYT1 436 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 WDCPQ9H6R7 721 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 SYNCQ9H7C4 482 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 ANLNQ9NQW6 1124 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 PIGVQ9NUD9 493 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 EVA1BQ9NVM1 165 aa19.83■□□□□ 0.77
CLN3-262ENST00000637699 TRPM6Q9BX84 2022 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 POM121BA6NF01 834 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 CAPN8A6NHC0 703 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 J3QKU1 62 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 LEFTY1O75610 366 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 PAK4O96013 591 aaPredicted RBP19.82■□□□□ 0.76
CLN3-262ENST00000637699 TFE3P19532 575 aaPredicted RBP19.82■□□□□ 0.76
CLN3-262ENST00000637699 SLC9A1P19634 815 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 CLCN6P51797 869 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 RNASE9P60153 205 aaKnown RBP19.82■□□□□ 0.76
CLN3-262ENST00000637699 SLC6A3Q01959 620 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 FZD2Q14332 565 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 BECN1Q14457 450 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 OTUD1Q5VV17 481 aaPredicted RBP19.82■□□□□ 0.76
CLN3-262ENST00000637699 C22orf39Q6P5X5 142 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 TRIM65Q6PJ69 517 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 DPY19L3Q6ZPD9 716 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 DCP2Q8IU60 420 aaKnown RBP19.82■□□□□ 0.76
CLN3-262ENST00000637699 CREBRFQ8IUR6 639 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 DCAF4L2Q8NA75 395 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 PPP1R16AQ96I34 528 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 VCPIP1Q96JH7 1222 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 ASCL3Q9NQ33 180 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 MPP6Q9NZW5 540 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 PCDHGC3Q9UN70 934 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 HS3ST3A1Q9Y663 406 aa19.82■□□□□ 0.76
CLN3-262ENST00000637699 CPED1A4D0V7 1026 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 I6L893 689 aaPredicted RBP19.81■□□□□ 0.76
CLN3-262ENST00000637699 RAD51BO15315 384 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 TGM2P21980 687 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 CXCR3P49682 368 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 NEK3P51956 506 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 RPS21P63220 83 aaKnown RBP19.81■□□□□ 0.76
CLN3-262ENST00000637699 PAK1Q13153 545 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 MORC3Q14149 939 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 FGL2Q14314 439 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 CDKN3Q16667 212 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 ISXQ2M1V0 245 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 C3orf38Q5JPI3 329 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 SLC26A9Q7LBE3 791 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 SETD3Q86TU7 594 aaPredicted RBP19.81■□□□□ 0.76
CLN3-262ENST00000637699 ZNF683Q8IZ20 524 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 ZNF548Q8NEK5 533 aaPredicted RBP19.81■□□□□ 0.76
CLN3-262ENST00000637699 OR7D4Q8NG98 312 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 FAM174AQ8TBP5 190 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 FAM81BQ96LP2 452 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 NPY6RQ99463 290 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 SPON2Q9BUD6 331 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms