RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TMCO3Q6UWJ1 677 aa21.11■□□□□ 0.97
CLN3-240ENST00000631023 PLPP6Q8IY26 295 aa21.11■□□□□ 0.97
CLN3-240ENST00000631023 DEFB119Q8N690 84 aa21.11■□□□□ 0.97
CLN3-240ENST00000631023 CADM4Q8NFZ8 388 aa21.11■□□□□ 0.97
CLN3-240ENST00000631023 OR2A12Q8NGT7 310 aa21.11■□□□□ 0.97
CLN3-240ENST00000631023 ZNF419Q96HQ0 510 aaPredicted RBP21.11■□□□□ 0.97
CLN3-240ENST00000631023 CSPG4P5Q96PW8 444 aa21.11■□□□□ 0.97
CLN3-240ENST00000631023 PPM1HQ9ULR3 514 aa21.11■□□□□ 0.97
CLN3-240ENST00000631023 FOXD2O60548 495 aaPredicted RBP21.1■□□□□ 0.97
CLN3-240ENST00000631023 RNASEH2AO75792 299 aaKnown RBP21.1■□□□□ 0.97
CLN3-240ENST00000631023 AMPD1P23109 780 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 CHRNA3P32297 505 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 MPLP40238 635 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 PTGER3P43115 390 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 HADHBP55084 474 aaKnown RBP21.1■□□□□ 0.97
CLN3-240ENST00000631023 GSDMDP57764 484 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 TAS2R40P59535 323 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 INO80DQ53TQ3 878 aaPredicted RBP21.1■□□□□ 0.97
CLN3-240ENST00000631023 SYCP2LQ5T4T6 812 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 ARMCX6Q7L4S7 300 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 HDDC3Q8N4P3 179 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 CELF6Q96J87 481 aaKnown RBP21.1■□□□□ 0.97
CLN3-240ENST00000631023 SLC39A8Q9C0K1 460 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 PCED1AQ9H1Q7 454 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 TNKS2Q9H2K2 1166 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 FZD4Q9ULV1 537 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 FCF1Q9Y324 198 aaKnown RBP21.1■□□□□ 0.97
CLN3-240ENST00000631023 A0A0A6YYK5 440 aaPredicted RBP21.1■□□□□ 0.97
CLN3-240ENST00000631023 CD160O95971 181 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 PRNPP04156 253 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 PAPOLAP51003 745 aaKnown RBP21.1■□□□□ 0.97
CLN3-240ENST00000631023 CARD16Q5EG05 197 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 CPNE8Q86YQ8 564 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 TMIEQ8NEW7 156 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 PIP4K2CQ8TBX8 421 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 FAM71BQ8TC56 605 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 TSC1Q92574 1164 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 PIGKQ92643 395 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 CALR3Q96L12 384 aaKnown RBP21.1■□□□□ 0.97
CLN3-240ENST00000631023 HSPA12BQ96MM6 686 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 CALN1Q9BXU9 219 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 KLC2Q9H0B6 622 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 VPS45Q9NRW7 570 aa21.1■□□□□ 0.97
CLN3-240ENST00000631023 A0A1W2PP55 124 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 ZNF821O75541 412 aaPredicted RBP21.09■□□□□ 0.97
CLN3-240ENST00000631023 SEMA4FO95754 770 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 ACSL1P33121 698 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 SERPINB6P35237 376 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 SNRPD1P62314 119 aaKnown RBP21.09■□□□□ 0.97
CLN3-240ENST00000631023 CCDC15Q0P6D6 951 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 CSRP2Q16527 193 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 ATP13A4Q4VNC1 1196 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 WDR45BQ5MNZ6 344 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 AFMIDQ63HM1 303 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 RAD9BQ6WBX8 426 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 DPY19L3Q6ZPD9 716 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 SYT12Q8IV01 421 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 NEUROG2Q9H2A3 272 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 SEMA4GQ9NTN9 838 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 IL36AQ9UHA7 158 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 ACTL7AQ9Y615 435 aa21.09■□□□□ 0.97
CLN3-240ENST00000631023 CFAP54Q96N23 3096 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 CACNA1EQ15878 2313 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 MEI4A8MW99 385 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 DFFAO00273 331 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 ZNF806P0C7X5 589 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 ARSEP51690 589 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 PLA2G2CQ5R387 149 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 LEKR1Q6ZMV7 388 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 SLC41A1Q8IVJ1 513 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 KIAA2013Q8IYS2 634 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 TXLNBQ8N3L3 684 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 RYBPQ8N488 228 aaPredicted RBP21.08■□□□□ 0.97
CLN3-240ENST00000631023 AADATQ8N5Z0 425 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 HEPHQ9BQS7 1158 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 ZNF670Q9BS34 389 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 UBA2Q9UBT2 640 aaPredicted RBP21.08■□□□□ 0.97
CLN3-240ENST00000631023 SARDHQ9UL12 918 aa21.08■□□□□ 0.97
CLN3-240ENST00000631023 DOCK9Q9BZ29 2069 aa21.08■□□□□ 0.96
CLN3-240ENST00000631023 SPOPO43791 374 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 PRAMEF11O60813 436 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 TMCC1O94876 653 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 GSRP00390 522 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 TGM1P22735 817 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 ITPKAP23677 461 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 IL4RP24394 825 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 HOXD12P35452 270 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 MMRN1Q13201 1228 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 DPYSL3Q14195 570 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 ODF2Q5BJF6 829 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 LRRC38Q5VT99 294 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP21.07■□□□□ 0.96
CLN3-240ENST00000631023 TMEM139Q8IV31 216 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 RGL4Q8IZJ4 473 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 NPWQ8N729 165 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 CHST14Q8NCH0 376 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 TM6SF2Q9BZW4 377 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 PARD6AQ9NPB6 346 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 DYRK4Q9NR20 520 aa21.07■□□□□ 0.96
CLN3-240ENST00000631023 ANKRD36A6QL64 1941 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms