RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CCDC66A2RUB6 948 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 J3KR12 359 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 TMCC1O94876 653 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 ACADMP11310 421 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 CTNNA2P26232 953 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 TAZQ16635 292 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 MFSD7Q6UXD7 560 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 ARHGAP36Q6ZRI8 547 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 NT5DC3Q86UY8 548 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 OR2A12Q8NGT7 310 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 RLN3Q8WXF3 142 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 OR8D1Q8WZ84 308 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 EPC1Q9H2F5 836 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 SEMA4AQ9H3S1 761 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 SP110Q9HB58 689 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 CD93Q9NPY3 652 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 UBA2Q9UBT2 640 aaPredicted RBP20.68■□□□□ 0.9
PTCD3-220ENST00000627371 IPO11Q9UI26 975 aaKnown RBP20.68■□□□□ 0.9
PTCD3-220ENST00000627371 PPP2R2CQ9Y2T4 447 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 PCDHA3Q9Y5H8 950 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 ANKRD36A6QL64 1941 aa20.68■□□□□ 0.9
PTCD3-220ENST00000627371 PROB1E7EW31 1015 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 MCF2LO15068 1137 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 BNIP3LO60238 219 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 DNTTP04053 509 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 CDKN2BP42772 138 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 RECQLP46063 649 aaPredicted RBP20.67■□□□□ 0.9
PTCD3-220ENST00000627371 IL10RBQ08334 325 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 NUMA1Q14980 2115 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 SLC9A4Q6AI14 798 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 PEX26Q7Z412 305 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 DSG4Q86SJ6 1040 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 C11orf74Q86VG3 221 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 MMAAQ8IVH4 418 aaKnown RBP20.67■□□□□ 0.9
PTCD3-220ENST00000627371 PLPP6Q8IY26 295 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 EXD1Q8NHP7 514 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.67■□□□□ 0.9
PTCD3-220ENST00000627371 RBM41Q96IZ5 413 aaKnown RBP20.67■□□□□ 0.9
PTCD3-220ENST00000627371 MAK16Q9BXY0 300 aaKnown RBP20.67■□□□□ 0.9
PTCD3-220ENST00000627371 TNKS2Q9H2K2 1166 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 ITM2CQ9NQX7 267 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 AMFRQ9UKV5 643 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 SCML1Q9UN30 329 aa20.67■□□□□ 0.9
PTCD3-220ENST00000627371 FARP1Q9Y4F1 1045 aaPredicted RBP20.67■□□□□ 0.9
PTCD3-220ENST00000627371 TNRC6BQ9UPQ9 1833 aaKnown RBP20.67■□□□□ 0.9
PTCD3-220ENST00000627371 IGHV1OR15-9A0A0B4J2B8 117 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 ZRANB2O95218 330 aaKnown RBP eCLIP20.66■□□□□ 0.9
PTCD3-220ENST00000627371 GSRP00390 522 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 IGLV3-19P01714 112 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 TPMTP51580 245 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 GALNT2Q10471 571 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 SIM2Q14190 667 aaPredicted RBP20.66■□□□□ 0.9
PTCD3-220ENST00000627371 CST6Q15828 149 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 TTC31Q49AM3 519 aaPredicted RBP20.66■□□□□ 0.9
PTCD3-220ENST00000627371 SPOCD1Q6ZMY3 1216 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 CEP68Q76N32 757 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 LRRC49Q8IUZ0 686 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 RCOR2Q8IZ40 523 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 ATPAF2Q8N5M1 289 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 PLD5Q8N7P1 536 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 TM6SF2Q9BZW4 377 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 LZTFL1Q9NQ48 299 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 CYP8B1Q9UNU6 501 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 INVSQ9Y283 1065 aa20.66■□□□□ 0.9
PTCD3-220ENST00000627371 APOL1O14791 398 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 FTCDO95954 541 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 ADH1BP00325 375 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 IL1BP01584 269 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 ZFXP17010 805 aaPredicted RBP20.65■□□□□ 0.9
PTCD3-220ENST00000627371 PSMD8P48556 350 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 PEX5P50542 639 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 SNRPD1P62314 119 aaKnown RBP20.65■□□□□ 0.9
PTCD3-220ENST00000627371 GBE1Q04446 702 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 CCDC173Q0VFZ6 552 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 RFTN1Q14699 578 aaPredicted RBP20.65■□□□□ 0.9
PTCD3-220ENST00000627371 CARD16Q5EG05 197 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 TFDP3Q5H9I0 405 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 DPY19L3Q6ZPD9 716 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 RFX6Q8HWS3 928 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 FAM160A2Q8N612 972 aaPredicted RBP20.65■□□□□ 0.9
PTCD3-220ENST00000627371 FRMD1Q8N878 549 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 OR2AP1Q8NGE2 309 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 ZNF830Q96NB3 372 aaPredicted RBP20.65■□□□□ 0.9
PTCD3-220ENST00000627371 ZNF599Q96NL3 588 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 PABPC3Q9H361 631 aaKnown RBP20.65■□□□□ 0.9
PTCD3-220ENST00000627371 MBD1Q9UIS9 605 aaPredicted RBP20.65■□□□□ 0.9
PTCD3-220ENST00000627371 PPM1HQ9ULR3 514 aa20.65■□□□□ 0.9
PTCD3-220ENST00000627371 SDK1Q7Z5N4 2213 aa20.64■□□□□ 0.89
PTCD3-220ENST00000627371 MIF4GDA9UHW6 222 aaKnown RBP20.64■□□□□ 0.89
PTCD3-220ENST00000627371 C1QTNF3-AMACRE9PGA6 284 aa20.64■□□□□ 0.89
PTCD3-220ENST00000627371 MID1O15344 667 aa20.64■□□□□ 0.89
PTCD3-220ENST00000627371 MAFKO60675 156 aa20.64■□□□□ 0.89
PTCD3-220ENST00000627371 CTSLP07711 333 aa20.64■□□□□ 0.89
PTCD3-220ENST00000627371 C5AR1P21730 350 aa20.64■□□□□ 0.89
PTCD3-220ENST00000627371 BCKDHBP21953 392 aa20.64■□□□□ 0.89
PTCD3-220ENST00000627371 CHRNA3P32297 505 aa20.64■□□□□ 0.89
PTCD3-220ENST00000627371 SLC8A1P32418 973 aa20.64■□□□□ 0.89
PTCD3-220ENST00000627371 GARSP41250 739 aaKnown RBP20.64■□□□□ 0.89
PTCD3-220ENST00000627371 DNA2P51530 1060 aa20.64■□□□□ 0.89
PTCD3-220ENST00000627371 CCNHP51946 323 aaPredicted RBP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms