RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 ZNF212Q9UDV6 495 aa11.03□□□□□ -0.64
FAM3A-221ENST00000612856 SLC39A10Q9ULF5 831 aa11.03□□□□□ -0.64
FAM3A-221ENST00000612856 ASB3Q9Y575 518 aa11.03□□□□□ -0.64
FAM3A-221ENST00000612856 AK5Q9Y6K8 562 aa11.03□□□□□ -0.64
FAM3A-221ENST00000612856 SIPA1L1O43166 1804 aa11.03□□□□□ -0.64
FAM3A-221ENST00000612856 POLR2AP24928 1970 aaKnown RBP11.02□□□□□ -0.64
FAM3A-221ENST00000612856 H3BQ06 376 aaPredicted RBP11.02□□□□□ -0.64
FAM3A-221ENST00000612856 SEC24DO94855 1032 aaPredicted RBP11.02□□□□□ -0.64
FAM3A-221ENST00000612856 MT-CO1P00395 513 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 ITGB1P05556 798 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 CHRNB2P17787 502 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 BGNP21810 368 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 PRMT2P55345 433 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 NR1H3Q13133 447 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 SLC1A5Q15758 541 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 C2orf27AQ580R0 203 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 RBM12BQ8IXT5 1001 aaKnown RBP11.02□□□□□ -0.64
FAM3A-221ENST00000612856 ZC3H3Q8IXZ2 948 aaKnown RBP11.02□□□□□ -0.64
FAM3A-221ENST00000612856 TMEM86AQ8N2M4 240 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 KREMEN2Q8NCW0 462 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 LMO3Q8TAP4 145 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 SNX27Q96L92 541 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 GAS2L1Q99501 681 aaPredicted RBP11.02□□□□□ -0.64
FAM3A-221ENST00000612856 XAB2Q9HCS7 855 aaKnown RBP11.02□□□□□ -0.64
FAM3A-221ENST00000612856 TMEM161AQ9NX61 479 aa11.02□□□□□ -0.64
FAM3A-221ENST00000612856 FAM237BA0A1B0GVD1 139 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 RFPL2O75678 378 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 VNN1O95497 513 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 EDN1P05305 212 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 CA3P07451 260 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 SLC2A3P11169 496 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 CDK7P50613 346 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 C1QBPQ07021 282 aaKnown RBP11.02□□□□□ -0.65
FAM3A-221ENST00000612856 FNDC3BQ53EP0 1204 aaKnown RBP11.02□□□□□ -0.65
FAM3A-221ENST00000612856 RINLQ6ZS11 566 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 GSTCDQ8NEC7 633 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 THAP11Q96EK4 314 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 GPR62Q9BZJ7 368 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 MCOLN1Q9GZU1 580 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 CAAP1Q9H8G2 361 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 R3HDM2Q9Y2K5 976 aaKnown RBP11.02□□□□□ -0.65
FAM3A-221ENST00000612856 SLC45A1Q9Y2W3 748 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 DNAJC13O75165 2243 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 ARFGEF1Q9Y6D6 1849 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 ENPP3O14638 875 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 TRIM16O95361 564 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 GFAPP14136 432 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 CCNB1P14635 433 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 TCN1P20061 433 aaPredicted RBP11.02□□□□□ -0.65
FAM3A-221ENST00000612856 RPL9P32969 192 aaKnown RBP11.02□□□□□ -0.65
FAM3A-221ENST00000612856 PPM1AP35813 382 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 NAA20P61599 178 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 DEFB103AP81534 67 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 DDX39BQ13838 428 aaKnown RBP11.02□□□□□ -0.65
FAM3A-221ENST00000612856 USP10Q14694 798 aaKnown RBP11.02□□□□□ -0.65
FAM3A-221ENST00000612856 AGMOQ6ZNB7 445 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 TCP10LQ8TDR4 215 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 GDPD5Q8WTR4 605 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 PRDM12Q9H4Q4 367 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 BPIFA1Q9NP55 256 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 TAS2R1Q9NYW7 299 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 CRLS1Q9UJA2 301 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 DNAJC16Q9Y2G8 782 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 STXBP5LQ9Y2K9 1186 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 SH3GLB1Q9Y371 365 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 STARD13Q9Y3M8 1113 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 PPME1Q9Y570 386 aa11.02□□□□□ -0.65
FAM3A-221ENST00000612856 CES2O00748 559 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 ERCC2P18074 760 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 PAMP19021 973 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 TM4SF4P48230 202 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 BMPR2Q13873 1038 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 FOXB2Q5VYV0 432 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 PTRHD1Q6GMV3 140 aaKnown RBP11.01□□□□□ -0.65
FAM3A-221ENST00000612856 B3GNT6Q6ZMB0 384 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 ZNF554Q86TJ5 538 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 TMEM110Q86TL2 294 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 ALYREFQ86V81 257 aaKnown RBP11.01□□□□□ -0.65
FAM3A-221ENST00000612856 COLGALT1Q8NBJ5 622 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 SLC4A11Q8NBS3 891 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 POF1BQ8WVV4 589 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 NRG4Q8WWG1 115 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 PPWD1Q96BP3 646 aaKnown RBP11.01□□□□□ -0.65
FAM3A-221ENST00000612856 SLC7A6OSQ96CW6 309 aaPredicted RBP11.01□□□□□ -0.65
FAM3A-221ENST00000612856 ABHD8Q96I13 439 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 NTPCRQ9BSD7 190 aaKnown RBP11.01□□□□□ -0.65
FAM3A-221ENST00000612856 PAIP1Q9H074 479 aaKnown RBP11.01□□□□□ -0.65
FAM3A-221ENST00000612856 ZDHHC6Q9H6R6 413 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 PTPRHQ9HD43 1115 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 EDF1O60869 148 aaKnown RBP11.01□□□□□ -0.65
FAM3A-221ENST00000612856 BANF1O75531 89 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 CSH1P0DML2 217 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 CSH2P0DML3 217 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 GJA8P48165 433 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 SLC25A3Q00325 362 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 DCAF12L1Q5VU92 463 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 LRRC52Q8N7C0 313 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 ULK4Q96C45 1275 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 SERPINB11Q96P15 392 aa11.01□□□□□ -0.65
FAM3A-221ENST00000612856 NDEL1Q9GZM8 345 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms