RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 MRGPRX1Q96LB2 322 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 MKRN2Q9H000 416 aaKnown RBP19.71■□□□□ 0.75
UPF1-209ENST00000600310 DTLQ9NZJ0 730 aa19.71■□□□□ 0.75
UPF1-209ENST00000600310 UBA2Q9UBT2 640 aaPredicted RBP19.71■□□□□ 0.75
UPF1-209ENST00000600310 FCF1Q9Y324 198 aaKnown RBP19.71■□□□□ 0.75
UPF1-209ENST00000600310 GOLGA6L9A6NEM1 432 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 AXIN1O15169 862 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 MAFKO60675 156 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 TMCC1O94876 653 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 NDUFV2P19404 249 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 MX2P20592 715 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 CETN2P41208 172 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 GARSP41250 739 aaKnown RBP19.7■□□□□ 0.74
UPF1-209ENST00000600310 PXNP49023 591 aaPredicted RBP19.7■□□□□ 0.74
UPF1-209ENST00000600310 FNTBP49356 437 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 ELAVL3Q14576 367 aaKnown RBP19.7■□□□□ 0.74
UPF1-209ENST00000600310 RPS6KA1Q15418 735 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 HEATR6Q6AI08 1181 aaKnown RBP19.7■□□□□ 0.74
UPF1-209ENST00000600310 WDR5BQ86VZ2 330 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 PLPP6Q8IY26 295 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 ATPAF2Q8N5M1 289 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 HMGB4Q8WW32 186 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 TSGA13Q96PP4 275 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 OSBPL8Q9BZF1 889 aa19.7■□□□□ 0.74
UPF1-209ENST00000600310 RSPH9Q9H1X1 276 aaPredicted RBP19.7■□□□□ 0.74
UPF1-209ENST00000600310 BCCIPQ9P287 314 aaKnown RBP eCLIP19.7■□□□□ 0.74
UPF1-209ENST00000600310 USP27XA6NNY8 438 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 MAP3K6O95382 1288 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 TGM2P21980 687 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 NR2C2P49116 596 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 DNA2P51530 1060 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 DYNLT1P63172 113 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 NHLH1Q02575 133 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 ADCY2Q08462 1091 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 RFTN1Q14699 578 aaPredicted RBP19.69■□□□□ 0.74
UPF1-209ENST00000600310 CYTH1Q15438 398 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 DCAF12L1Q5VU92 463 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 BBS12Q6ZW61 710 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 LONP2Q86WA8 852 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 STK40Q8N2I9 435 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 PGBD3Q8N328 593 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 OR2A12Q8NGT7 310 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 CCDC114Q96M63 670 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 ZNF599Q96NL3 588 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 FAM129BQ96TA1 746 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 TNKS2Q9H2K2 1166 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 ZSCAN32Q9NX65 697 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 HEY1Q9Y5J3 304 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 NUP205Q92621 2012 aa19.69■□□□□ 0.74
UPF1-209ENST00000600310 CKAP5Q14008 2032 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 H0Y858 1186 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 MCF2LO15068 1137 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 ALOX15BO15296 676 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 PEX11BO96011 259 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 RECQLP46063 649 aaPredicted RBP19.68■□□□□ 0.74
UPF1-209ENST00000600310 RPS14P62263 151 aaKnown RBP19.68■□□□□ 0.74
UPF1-209ENST00000600310 ZNF211Q13398 564 aaPredicted RBP19.68■□□□□ 0.74
UPF1-209ENST00000600310 CARD16Q5EG05 197 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 TMCO4Q5TGY1 634 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 ZNF776Q68DI1 518 aaPredicted RBP19.68■□□□□ 0.74
UPF1-209ENST00000600310 AADACL2Q6P093 401 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 NPNTQ6UXI9 565 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 BZW1Q7L1Q6 419 aaKnown RBP19.68■□□□□ 0.74
UPF1-209ENST00000600310 ZBTB44Q8NCP5 570 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 OR8D1Q8WZ84 308 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 PRCCQ92733 491 aaPredicted RBP19.68■□□□□ 0.74
UPF1-209ENST00000600310 FATE1Q969F0 183 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 HDAC11Q96DB2 347 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 SIPA1Q96FS4 1042 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 OLFM3Q96PB7 478 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 HERPUD2Q9BSE4 406 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 HEMGNQ9BXL5 484 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 TLR10Q9BXR5 811 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 IRF2BPLQ9H1B7 796 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 SLC6A17Q9H1V8 727 aa19.68■□□□□ 0.74
UPF1-209ENST00000600310 FARP1Q9Y4F1 1045 aaPredicted RBP19.68■□□□□ 0.74
UPF1-209ENST00000600310 BNIP3LO60238 219 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 KIF5CO60282 957 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 RNASEH1O60930 286 aaKnown RBP19.67■□□□□ 0.74
UPF1-209ENST00000600310 GSRP00390 522 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 CCNCP24863 283 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 PTPN5P54829 565 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 SNRPD1P62314 119 aaKnown RBP19.67■□□□□ 0.74
UPF1-209ENST00000600310 ZBTB16Q05516 673 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 LBRQ14739 615 aaKnown RBP19.67■□□□□ 0.74
UPF1-209ENST00000600310 PDK1Q15118 436 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 ZNF569Q5MCW4 686 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 TIGD7Q6NT04 549 aaPredicted RBP19.67■□□□□ 0.74
UPF1-209ENST00000600310 KIAA1324Q6UXG2 1013 aaKnown RBP19.67■□□□□ 0.74
UPF1-209ENST00000600310 DPY19L3Q6ZPD9 716 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 OR2AP1Q8NGE2 309 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 TM6SF2Q9BZW4 377 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 KCND1Q9NSA2 647 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 LHX3Q9UBR4 397 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 PCDHGA2Q9Y5H1 932 aa19.67■□□□□ 0.74
UPF1-209ENST00000600310 TJP3O95049 919 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 PECAM1P16284 738 aaPredicted RBP19.66■□□□□ 0.74
UPF1-209ENST00000600310 RHOAP61586 193 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 ZNF33AQ06730 810 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 PPIDQ08752 370 aaKnown RBP19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms