RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 A0A0D9SEW6 157 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 POM121BA6NF01 834 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 BECN2A8MW95 431 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 PPP1R3GB7ZBB8 358 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 PRAMEF26H0Y7S4 382 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 AGRPO00253 132 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 YKT6O15498 198 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 ATP9BO43861 1147 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 OPA1O60313 960 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 CSO75390 466 aaKnown RBP8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 PAGE1O75459 146 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 PIAS2O75928 621 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 PCDH8O95206 1070 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 ADCY5O95622 1261 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 ERBB2P04626 1255 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 GKP32189 559 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 ACTN2P35609 894 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 ZNF211Q13398 564 aaPredicted RBP8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 FGL2Q14314 439 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 TCEA2Q15560 299 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 ZNF284Q2VY69 593 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 SETMARQ53H47 684 aaPredicted RBP8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 COBLL1Q53SF7 1204 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 ARSIQ5FYB1 569 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 RABGAP1LQ5R372 815 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 GCNT7Q6ZNI0 430 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 TFAP2DQ7Z6R9 452 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 TMEM110Q86TL2 294 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 TRIM69Q86WT6 500 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 CREBRFQ8IUR6 639 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 TRIM59Q8IWR1 403 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 OXR1Q8N573 874 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 ATP11CQ8NB49 1132 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 C1orf131Q8NDD1 294 aaKnown RBP8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 OR7D4Q8NG98 312 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 OR2A12Q8NGT7 310 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 OR4C6Q8NH72 309 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 SPATA20Q8TB22 786 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 RFFLQ8WZ73 363 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 MS4A3Q96HJ5 214 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 APOLD1Q96LR9 279 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 GSDMAQ96QA5 445 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 IRX2Q9BZI1 471 aaPredicted RBP8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 TRIM4Q9C037 500 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 MUC3BQ9H195 1237 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 THAP9Q9H5L6 903 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 WDR70Q9NW82 654 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 DNAJC28Q9NX36 388 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 MPP6Q9NZW5 540 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 VPS51Q9UID3 782 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 KLF15Q9UIH9 416 aa8.86□□□□□ -0.99
SHKBP1-220ENST00000599716 PDZD2O15018 2839 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 CPED1A4D0V7 1026 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 C1QTNF3-AMACRE9PGA6 284 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 TERTO14746 1132 aaKnown RBP8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 PSMA7O14818 248 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 MCF2LO15068 1137 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 KLK10O43240 276 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 SLC7A4O43246 635 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 SART1O43290 800 aaKnown RBP8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 SMC2O95347 1197 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 AFPP02771 609 aaKnown RBP8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 RHOCP08134 193 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 SLC9A1P19634 815 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 TGM2P21980 687 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 CCR1P32246 355 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 CHRNA3P32297 505 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 ACADSBP45954 432 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 PLK1P53350 603 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 RNASE9P60153 205 aaKnown RBP8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 CDK17Q00537 523 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 GCNT1Q02742 428 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 ZNF177Q13360 481 aaPredicted RBP8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 ILKQ13418 452 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 CDKN3Q16667 212 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 DEFB133Q30KQ1 61 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 KRTAP21-3Q3LHN1 58 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 C2CD6Q53TS8 623 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 C3orf38Q5JPI3 329 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 LRRC73Q5JTD7 316 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 LCE2DQ5TA82 110 aaPredicted RBP8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 FAM46CQ5VWP2 391 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 CDCP2Q5VXM1 449 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 KIAA1614Q5VZ46 1190 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 GUSBP11Q6P575 273 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 FOXR1Q6PIV2 292 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 Q6ZSR6 202 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 PTAR1Q7Z6K3 402 aaPredicted RBP8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 DSG4Q86SJ6 1040 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 IQCHQ86VS3 1027 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 NETO2Q8NC67 525 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 OR6K2Q8NGY2 324 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 HIC2Q96JB3 615 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 BMFQ96LC9 184 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 CEP63Q96MT8 703 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 SLC2A13Q96QE2 648 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 SRRTQ9BXP5 876 aaKnown RBP8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 TCEAL2Q9H3H9 227 aaPredicted RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms