RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 IPO11Q9UI26 975 aaKnown RBP10.38□□□□□ -0.75
TRIM28-210ENST00000597618 ZFR2Q9UPR6 939 aaKnown RBP10.38□□□□□ -0.75
TRIM28-210ENST00000597618 HS3ST2Q9Y278 367 aa10.38□□□□□ -0.75
TRIM28-210ENST00000597618 COL27A1Q8IZC6 1860 aaPredicted RBP10.38□□□□□ -0.75
TRIM28-210ENST00000597618 POM121BA6NF01 834 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 TMX2-CTNND1H3BSU7 103 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 CETN3O15182 167 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 TRUB2O95900 331 aaKnown RBP10.37□□□□□ -0.75
TRIM28-210ENST00000597618 IGLV3-25P01717 112 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 LIPCP11150 499 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 SLC2A3P11169 496 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 GP1BBP13224 206 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 JUNDP17535 347 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 BRD2P25440 801 aaKnown RBP10.37□□□□□ -0.75
TRIM28-210ENST00000597618 SLC5A2P31639 672 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 ACADSBP45954 432 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 CENPCQ03188 943 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 TLE1Q04724 770 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 MAPK8IP2Q13387 824 aaPredicted RBP10.37□□□□□ -0.75
TRIM28-210ENST00000597618 PDE1CQ14123 709 aaPredicted RBP10.37□□□□□ -0.75
TRIM28-210ENST00000597618 SYPL2Q5VXT5 272 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 ZSCAN30Q86W11 494 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 JAMLQ86YT9 394 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 FBXO39Q8N4B4 442 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 OR2A12Q8NGT7 310 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 BTN2A2Q8WVV5 523 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 CCDC3Q9BQI4 270 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 ZSWIM1Q9BR11 485 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 C2orf49Q9BVC5 232 aaPredicted RBP10.37□□□□□ -0.75
TRIM28-210ENST00000597618 SLC17A9Q9BYT1 436 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 STRADBQ9C0K7 418 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 FAM204AQ9H8W3 233 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 POPDC2Q9HBU9 364 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 ST7Q9NRC1 585 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 FOXD4L1Q9NU39 408 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 SEPT10Q9P0V9 454 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 SPASTQ9UBP0 616 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 KLF15Q9UIH9 416 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 OR51B4Q9Y5P0 310 aa10.37□□□□□ -0.75
TRIM28-210ENST00000597618 FPGTO14772 594 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 SLC16A3O15427 465 aaKnown RBP10.36□□□□□ -0.75
TRIM28-210ENST00000597618 NOBOXO60393 691 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 CLDN11O75508 207 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 PRR29P0C7W0 189 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 SRCP12931 536 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 PFKFB1P16118 471 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 CCR1P32246 355 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 UGT1A5P35504 534 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 RPL34P49207 117 aaKnown RBP10.36□□□□□ -0.75
TRIM28-210ENST00000597618 CLCN6P51797 869 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 NEK3P51956 506 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 KRT83P78385 493 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 LRMPQ12912 555 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 MTA1Q13330 715 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 UBAP2LQ14157 1087 aaKnown RBP10.36□□□□□ -0.75
TRIM28-210ENST00000597618 DRAP1Q14919 205 aaPredicted RBP10.36□□□□□ -0.75
TRIM28-210ENST00000597618 FOXD4L6Q3SYB3 417 aaPredicted RBP10.36□□□□□ -0.75
TRIM28-210ENST00000597618 ATL3Q6DD88 541 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 ESRP1Q6NXG1 681 aaKnown RBP10.36□□□□□ -0.75
TRIM28-210ENST00000597618 FBXL22Q6P050 247 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 FOXD4L3Q6VB84 417 aaPredicted RBP10.36□□□□□ -0.75
TRIM28-210ENST00000597618 RAB11FIP2Q7L804 512 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 SLC35F3Q8IY50 421 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 ATP11CQ8NB49 1132 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 ZSCAN1Q8NBB4 408 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 GRIN3AQ8TCU5 1115 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 FEM1CQ96JP0 617 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 TBATAQ96M53 351 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 MUC3BQ9H195 1237 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 EPB41L5Q9HCM4 733 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 APOBEC3BQ9UH17 382 aaKnown RBP10.36□□□□□ -0.75
TRIM28-210ENST00000597618 IL36AQ9UHA7 158 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 PCDHB4Q9Y5E5 795 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 PCDHGA4Q9Y5G9 962 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 DOCK9Q9BZ29 2069 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 NBASA2RRP1 2371 aa10.36□□□□□ -0.75
TRIM28-210ENST00000597618 TDRD6O60522 2096 aaKnown RBP10.35□□□□□ -0.75
TRIM28-210ENST00000597618 D6RAR5 112 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 LMO7DNF2Z398 122 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 NTN3O00634 580 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-210ENST00000597618 RAD51BO15315 384 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 PAK4O96013 591 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-210ENST00000597618 MT-CO1P00395 513 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 ANXA6P08133 673 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 ADRB3P13945 408 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 RECQLP46063 649 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-210ENST00000597618 YWHAZP63104 245 aaKnown RBP10.35□□□□□ -0.75
TRIM28-210ENST00000597618 SGCGQ13326 291 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 EIF4EBP2Q13542 120 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-210ENST00000597618 AUHQ13825 339 aaKnown RBP10.35□□□□□ -0.75
TRIM28-210ENST00000597618 FGL2Q14314 439 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 TGIF1Q15583 401 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 TBR1Q16650 682 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 PRRT3Q5FWE3 981 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 MANEAQ5SRI9 462 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 FOXD4L5Q5VV16 416 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-210ENST00000597618 DENND6BQ8NEG7 585 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 OR52K2Q8NGK3 314 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 FOXD4L4Q8WXT5 416 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-210ENST00000597618 NT5C1BQ96P26 610 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms