RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 TRADDQ15628 312 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 TPSAB1Q15661 275 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 PLEKHG6Q3KR16 790 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 ITPRIPL2Q3MIP1 535 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 LEXMQ3ZCV2 418 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 PITRM1Q5JRX3 1037 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 TRIM68Q6AZZ1 485 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 AHI1Q8N157 1196 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.52■□□□□ 0.08
TRIM28-209ENST00000597423 MCUQ8NE86 351 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 OR52K2Q8NGK3 314 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 FBXO25Q8TCJ0 367 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 CPT1BQ92523 772 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 ALG14Q96F25 216 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 POLR1EQ9GZS1 481 aaKnown RBP15.52■□□□□ 0.08
TRIM28-209ENST00000597423 SLC25A51Q9H1U9 297 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 PDFQ9HBH1 243 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 NT5MQ9NPB1 228 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 EIF2B3Q9NR50 452 aaKnown RBP15.52■□□□□ 0.08
TRIM28-209ENST00000597423 DNAJC17Q9NVM6 304 aaKnown RBP15.52■□□□□ 0.08
TRIM28-209ENST00000597423 SLC25A13Q9UJS0 675 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 SLC8A2Q9UPR5 921 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 ATP8A1Q9Y2Q0 1164 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 TTLL3Q9Y4R7 772 aa15.52■□□□□ 0.08
TRIM28-209ENST00000597423 DOCK6Q96HP0 2047 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 ZMPSTE24O75844 475 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 APRTP07741 180 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 ARSAP15289 507 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 CD70P32970 193 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 NRLP54845 237 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 ARL4CP56559 192 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 NSUN2Q08J23 767 aaKnown RBP eCLIP15.51■□□□□ 0.07
TRIM28-209ENST00000597423 HTR4Q13639 388 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 GRM2Q14416 872 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 GRAMD4Q6IC98 578 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 LINC00523Q86TU6 105 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 PDIK1LQ8N165 341 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 ZCCHC9Q8N567 271 aaKnown RBP15.51■□□□□ 0.07
TRIM28-209ENST00000597423 TAB3Q8N5C8 712 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-209ENST00000597423 CNTD1Q8N815 330 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 NAT16Q8N8M0 369 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 NAT8LQ8N9F0 302 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 CSGALNACT1Q8TDX6 532 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 FGF14Q92915 247 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 ZFYVE19Q96K21 471 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 LMLNQ96KR4 655 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 GUCD1Q96NT3 240 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 PSKH2Q96QS6 385 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 CEP41Q9BYV8 373 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 PLA2G2FQ9BZM2 168 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 BRD9Q9H8M2 597 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 VPS45Q9NRW7 570 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 ZDHHC18Q9NUE0 388 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 VPS51Q9UID3 782 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 SLC27A6Q9Y2P4 619 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 FARP1Q9Y4F1 1045 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-209ENST00000597423 NUMBLQ9Y6R0 609 aa15.51■□□□□ 0.07
TRIM28-209ENST00000597423 EIF3HO15372 352 aaKnown RBP eCLIP15.5■□□□□ 0.07
TRIM28-209ENST00000597423 ASLP04424 464 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 H2AFXP16104 143 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-209ENST00000597423 NFKB1P19838 968 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 PSMB4P28070 264 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 HLA-FP30511 346 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 EIF2DP41214 584 aaKnown RBP15.5■□□□□ 0.07
TRIM28-209ENST00000597423 ECT2LQ008S8 904 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 DNAJC21Q5F1R6 531 aaKnown RBP15.5■□□□□ 0.07
TRIM28-209ENST00000597423 RALGPS1Q5JS13 557 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 ZDHHC24Q6UX98 284 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 CENPUQ71F23 418 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 KIAA0907Q7Z7F0 614 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-209ENST00000597423 APCDD1Q8J025 514 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 WFDC5Q8TCV5 224 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 CAVIN3Q969G5 261 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 TTC17Q96AE7 1141 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 LRRC40Q9H9A6 602 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 XAB2Q9HCS7 855 aaKnown RBP15.5■□□□□ 0.07
TRIM28-209ENST00000597423 CLEC4EQ9ULY5 219 aa15.5■□□□□ 0.07
TRIM28-209ENST00000597423 SNAP91O60641 907 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 PPFIA2O75334 1257 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 TULP3O75386 442 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 AP2A1O95782 977 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 HLA-DQB2P05538 268 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 CISD3P0C7P0 127 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 MLNP12872 115 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 GLDCP23378 1020 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 CD68P34810 354 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-209ENST00000597423 MAPK8P45983 427 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 ARF5P84085 180 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 MPP3Q13368 585 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 KCNJ11Q14654 390 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 CYTH1Q15438 398 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 SMAD2Q15796 467 aaKnown RBP15.49■□□□□ 0.07
TRIM28-209ENST00000597423 FAXCQ5TGI0 409 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 MBLAC2Q68D91 279 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 NAPEPLDQ6IQ20 393 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 LEKR1Q6ZMV7 388 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 PDCD7Q8N8D1 485 aaKnown RBP15.49■□□□□ 0.07
TRIM28-209ENST00000597423 ATP11CQ8NB49 1132 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 AENQ8WTP8 325 aaKnown RBP15.49■□□□□ 0.07
TRIM28-209ENST00000597423 UCMAQ8WVF2 138 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms