RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 CCDC175P0C221 793 aa20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 PSMD8P48556 350 aa20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 DNA2P51530 1060 aa20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 MAP7D1Q3KQU3 841 aa20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 AFMIDQ63HM1 303 aa20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 METTL3Q86U44 580 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 MMAAQ8IVH4 418 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 PCDH19Q8TAB3 1148 aa20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 CASKIN2Q8WXE0 1202 aa20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 RNF25Q96BH1 459 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 TNKS2Q9H2K2 1166 aa20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 UBA2Q9UBT2 640 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 SMG5Q9UPR3 1016 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-214ENST00000597396 VPS13AQ96RL7 3174 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 ALOX15BO15296 676 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 PRAMEF11O60813 436 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 CD160O95971 181 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 IL1BP01584 269 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 ZBTB16Q05516 673 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 CST6Q15828 149 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 LPAL2Q16609 132 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 VSIG1Q86XK7 387 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 SYCE1Q8N0S2 351 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 FAM160A2Q8N612 972 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 GANCQ8TET4 914 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 FAF2Q96CS3 445 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 RNF157Q96PX1 679 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 FAM129BQ96TA1 746 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 MAK16Q9BXY0 300 aaKnown RBP20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 TM6SF2Q9BZW4 377 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 CD93Q9NPY3 652 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 ITM2CQ9NQX7 267 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 USP36Q9P275 1121 aaKnown RBP20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 SCML1Q9UN30 329 aa20.03■□□□□ 0.8
SHKBP1-214ENST00000597396 EP300Q09472 2414 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 IGHV1OR15-9A0A0B4J2B8 117 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 GRID2IPA4D2P6 1211 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 ZNF487B1APH4 448 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 C1QTNF3-AMACRE9PGA6 284 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 J3KR12 359 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 MCF2LO15068 1137 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 MFSD11O43934 449 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 TMCC1O94876 653 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 ADH1BP00325 375 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 BCKDHBP21953 392 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 TPMTP51580 245 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 SFSWAPQ12872 951 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 PAFAH1B3Q15102 231 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 ELF2Q15723 593 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 INO80DQ53TQ3 878 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 NCBP2-AS2Q69YL0 99 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 SLC36A4Q6YBV0 504 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 KBTBD6Q86V97 674 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 RFX6Q8HWS3 928 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 TP53INP2Q8IXH6 220 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 RYBPQ8N488 228 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 ATPAF2Q8N5M1 289 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 FRMD1Q8N878 549 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 OR2A12Q8NGT7 310 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 ISG20Q96AZ6 181 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 HINFPQ9BQA5 517 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 IPO11Q9UI26 975 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 AMFRQ9UKV5 643 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 GUCA1BQ9UMX6 200 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 NCKAP1Q9Y2A7 1128 aa20.02■□□□□ 0.8
SHKBP1-214ENST00000597396 MID1O15344 667 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 NDUFS2O75306 463 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 PALMO75781 387 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 RHOBTB1O94844 696 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 OXTRP30559 389 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 CHRNA3P32297 505 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 SLC8A1P32418 973 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 MARCKSL1P49006 195 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 RHOAP61586 193 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 SNRPD1P62314 119 aaKnown RBP20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 IL10RBQ08334 325 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 PLK5Q496M5 336 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 CARD16Q5EG05 197 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 FAM46CQ5VWP2 391 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 MFSD7Q6UXD7 560 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 ARHGAP36Q6ZRI8 547 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 PEX26Q7Z412 305 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 FAM124AQ86V42 546 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 CCDC50Q8IVM0 306 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 KATNAL2Q8IYT4 538 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 RNF10Q8N5U6 811 aaKnown RBP20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 PQLC3Q8N755 202 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 LRRC57Q8N9N7 239 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 PDLIM2Q96JY6 352 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 PABPC3Q9H361 631 aaKnown RBP20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 PDFQ9HBH1 243 aa20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 MBD1Q9UIS9 605 aaPredicted RBP20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 TNRC6BQ9UPQ9 1833 aaKnown RBP20.01■□□□□ 0.79
SHKBP1-214ENST00000597396 C3orf70A6NLC5 250 aaPredicted RBP20■□□□□ 0.79
SHKBP1-214ENST00000597396 APOL1O14791 398 aa20■□□□□ 0.79
SHKBP1-214ENST00000597396 ZNF821O75541 412 aaPredicted RBP20■□□□□ 0.79
SHKBP1-214ENST00000597396 ZRANB2O95218 330 aaKnown RBP eCLIP20■□□□□ 0.79
SHKBP1-214ENST00000597396 GSRP00390 522 aa20■□□□□ 0.79
SHKBP1-214ENST00000597396 PRNPP04156 253 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms