RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SNX13Q9Y5W8 968 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 G3V2L1 256 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 HDAC3O15379 428 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 ALDH1A2O94788 518 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 SEC24DO94855 1032 aaPredicted RBP15.51■□□□□ 0.07
UPF1-204ENST00000596842 NADK2Q4G0N4 442 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 C16orf89Q6UX73 402 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 TRIM67Q6ZTA4 783 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 ELMO2Q96JJ3 720 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 PKP2Q99959 881 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 GJD2Q9UKL4 321 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 PSMD13Q9UNM6 376 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 RGSL1A5PLK6 1076 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 H3BNX3 289 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 DNAJA2O60884 412 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 HARS2P49590 506 aaKnown RBP15.5■□□□□ 0.07
UPF1-204ENST00000596842 TMED10P49755 219 aaKnown RBP15.5■□□□□ 0.07
UPF1-204ENST00000596842 CCR3P51677 355 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 ZBTB17Q13105 803 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 CEACAM7Q14002 265 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 PTK2BQ14289 1009 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 SLC25A52Q3SY17 297 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 PKDCCQ504Y2 493 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 TRIML2Q8N7C3 387 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 NXNL1Q96CM4 212 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 RTKNQ9BST9 563 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 NAT9Q9BTE0 207 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 KCNU1A8MYU2 1149 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 NRP1O14786 923 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 ZSCAN9O15535 394 aaPredicted RBP15.5■□□□□ 0.07
UPF1-204ENST00000596842 GPC4O75487 556 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 ZNF484Q5JVG2 852 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 KBTBD6Q86V97 674 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 LIN28AQ9H9Z2 209 aaKnown RBP15.5■□□□□ 0.07
UPF1-204ENST00000596842 DNAJB4Q9UDY4 337 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 TLL2Q9Y6L7 1015 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 MLNP12872 115 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 MAGEA8P43361 318 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 ADARP55265 1226 aaKnown RBP15.5■□□□□ 0.07
UPF1-204ENST00000596842 PDAP1Q13442 181 aaKnown RBP15.5■□□□□ 0.07
UPF1-204ENST00000596842 CSHL1Q14406 222 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 WSCD1Q658N2 575 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 STEAP4Q687X5 459 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 FSTL5Q8N475 847 aaPredicted RBP15.5■□□□□ 0.07
UPF1-204ENST00000596842 NPWQ8N729 165 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 ZFAND2BQ8WV99 257 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 VRTNQ9H8Y1 702 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 PLEKHA5Q9HAU0 1116 aa15.5■□□□□ 0.07
UPF1-204ENST00000596842 SLC26A2P50443 739 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 MYBPC3Q14896 1274 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 ZFP42Q96MM3 310 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 SLC39A3Q9BRY0 314 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 RHOBTB2Q9BYZ6 727 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 BRD8Q9H0E9 1235 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 YJEFN3A6XGL0 299 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 MOCS2O96007 188 aaPredicted RBP15.49■□□□□ 0.07
UPF1-204ENST00000596842 ITKQ08881 620 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 MTA1Q13330 715 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 TTC39CQ8N584 583 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 B3GALNT2Q8NCR0 500 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 STN1Q9H668 368 aaKnown RBP15.49■□□□□ 0.07
UPF1-204ENST00000596842 TRPC7Q9HCX4 862 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 STK39Q9UEW8 545 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 HACD1B0YJ81 288 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 CCL22O00626 93 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 DDNO94850 711 aaPredicted RBP15.49■□□□□ 0.07
UPF1-204ENST00000596842 ME2P23368 584 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 KRT80Q6KB66 452 aa15.49■□□□□ 0.07
UPF1-204ENST00000596842 ZNF646O15015 1829 aaPredicted RBP15.49■□□□□ 0.07
UPF1-204ENST00000596842 COQ9O75208 318 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 MYL4P12829 197 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 RPL10P27635 214 aaKnown RBP15.48■□□□□ 0.07
UPF1-204ENST00000596842 ARHGAP1Q07960 439 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 LAMC2Q13753 1193 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 LRRC8EQ6NSJ5 796 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 NT5DC4Q86YG4 428 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 ZDHHC17Q8IUH5 632 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 SIX5Q8N196 739 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 MYO1HQ8N1T3 1032 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 NDEL1Q9GZM8 345 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 HEMK1Q9Y5R4 338 aaPredicted RBP15.48■□□□□ 0.07
UPF1-204ENST00000596842 YBX3P16989 372 aaKnown RBP eCLIP15.48■□□□□ 0.071e-6■■■□□ 18.8
UPF1-204ENST00000596842 ETFBP38117 255 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 CDKL1Q00532 357 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 AGKQ53H12 422 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 NOMO2Q5JPE7 1267 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 UGT2A3Q6UWM9 527 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 PDZD4Q76G19 769 aaPredicted RBP15.48■□□□□ 0.07
UPF1-204ENST00000596842 LILRA2Q8N149 483 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 PDCD6IPQ8WUM4 868 aaKnown RBP15.48■□□□□ 0.07
UPF1-204ENST00000596842 KBTBD7Q8WVZ9 684 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 EFCAB1Q9HAE3 211 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 COMMD3-BMI1R4GMX3 469 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 ZCWPW2A0A1B0GU75 182 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 TIMM44O43615 452 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 PTPN1P18031 435 aaKnown RBP15.48■□□□□ 0.07
UPF1-204ENST00000596842 PPARGP37231 505 aaPredicted RBP15.48■□□□□ 0.07
UPF1-204ENST00000596842 GRM5P41594 1212 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 DPP6P42658 865 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 SOX4Q06945 474 aaPredicted RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms