RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 HNRNPDQ14103 355 aaKnown RBP13.33□□□□□ -0.28
LIG1-212ENST00000596549 SHBQ15464 509 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 TRIP6Q15654 476 aaKnown RBP13.33□□□□□ -0.28
LIG1-212ENST00000596549 ARL13BQ3SXY8 428 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 FAM46CQ5VWP2 391 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 ACAD10Q6JQN1 1059 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 RWDD4Q6NW29 188 aaKnown RBP13.33□□□□□ -0.28
LIG1-212ENST00000596549 LRSAM1Q6UWE0 723 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 UNQ6494/PRO21346Q6UXR6 183 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 DPY19L3Q6ZPD9 716 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 RAB44Q7Z6P3 723 aaPredicted RBP13.33□□□□□ -0.28
LIG1-212ENST00000596549 ADAT2Q7Z6V5 191 aaKnown RBP13.33□□□□□ -0.28
LIG1-212ENST00000596549 GLRX5Q86SX6 157 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 TRIM69Q86WT6 500 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 GATA6Q92908 595 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 ARHGEF2Q92974 986 aaKnown RBP13.33□□□□□ -0.28
LIG1-212ENST00000596549 TBC1D31Q96DN5 1066 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 SPON2Q9BUD6 331 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 KDM4CQ9H3R0 1056 aa13.33□□□□□ -0.28
LIG1-212ENST00000596549 NOL6Q9H6R4 1146 aaKnown RBP13.33□□□□□ -0.28
LIG1-212ENST00000596549 TBC1D3DA0A087WVF3 549 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 TBC1D3IA0A087WXS9 549 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 TBC1D3EA0A087X179 549 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 TBC1D3KA0A087X1G2 549 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 A0A1B0GTQ1 180 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 A0A1W2PQC6 194 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 SYCE3A1L190 88 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 TBC1D3FA6NER0 549 aaPredicted RBP13.32□□□□□ -0.28
LIG1-212ENST00000596549 SMTNL1A8MU46 457 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 TBC1D3LB9A6J9 549 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 KPNA3O00505 521 aaPredicted RBP13.32□□□□□ -0.28
LIG1-212ENST00000596549 PLEKP08567 350 aaPredicted RBP13.32□□□□□ -0.28
LIG1-212ENST00000596549 TBC1D3HP0C7X1 549 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 CD38P28907 300 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 CCNHP51946 323 aaPredicted RBP13.32□□□□□ -0.28
LIG1-212ENST00000596549 ST3GAL2Q16842 350 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 TBC1D3GQ6DHY5 549 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 TBC1D3CQ6IPX1 549 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 NAPEPLDQ6IQ20 393 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 ZNF571Q7Z3V5 609 aaPredicted RBP13.32□□□□□ -0.28
LIG1-212ENST00000596549 SLFN11Q7Z7L1 901 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 TBC1D3Q8IZP1 549 aaPredicted RBP13.32□□□□□ -0.28
LIG1-212ENST00000596549 PNPLA1Q8N8W4 532 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 SETD7Q8WTS6 366 aaKnown RBP13.32□□□□□ -0.28
LIG1-212ENST00000596549 SERAC1Q96JX3 654 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 CCDC114Q96M63 670 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 TM6SF2Q9BZW4 377 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 CEP44Q9C0F1 390 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 AASDHPPTQ9NRN7 309 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 IL36AQ9UHA7 158 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 FZD10Q9ULW2 581 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 NEUROG3Q9Y4Z2 214 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 LRP4O75096 1905 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 TRPM6Q9BX84 2022 aa13.32□□□□□ -0.28
LIG1-212ENST00000596549 CACNA1GO43497 2377 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 TMCO5BA8MYB1 307 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 PCDHGA12O60330 932 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 LEFTY1O75610 366 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 PRNPP04156 253 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 PRKCIP41743 596 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 C21orf59P57076 290 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 NXPH1P58417 271 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 ASIC2Q16515 512 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 KLHL40Q2TBA0 621 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 ARSIQ5FYB1 569 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 EFHC2Q5JST6 749 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 PRAMEF14Q5SWL7 426 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 RETSATQ6NUM9 610 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 PARS2Q7L3T8 475 aaKnown RBP13.31□□□□□ -0.28
LIG1-212ENST00000596549 SLCO6A1Q86UG4 719 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 SPATS2Q86XZ4 545 aaKnown RBP13.31□□□□□ -0.28
LIG1-212ENST00000596549 CHCHD4Q8N4Q1 142 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 PCDH20Q8N6Y1 951 aaKnown RBP13.31□□□□□ -0.28
LIG1-212ENST00000596549 RTL3Q8N8U3 475 aaKnown RBP13.31□□□□□ -0.28
LIG1-212ENST00000596549 TMIEQ8NEW7 156 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 ADAMTS14Q8WXS8 1223 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 ELF4Q99607 663 aaPredicted RBP13.31□□□□□ -0.28
LIG1-212ENST00000596549 TRIM7Q9C029 511 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 HAUS4Q9H6D7 363 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 CBX8Q9HC52 389 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 PREBQ9HCU5 417 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 AIPL1Q9NZN9 384 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 TPX2Q9ULW0 747 aaKnown RBP13.31□□□□□ -0.28
LIG1-212ENST00000596549 ZFR2Q9UPR6 939 aaKnown RBP13.31□□□□□ -0.28
LIG1-212ENST00000596549 CA5BQ9Y2D0 317 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 ZFHX4Q86UP3 3567 aa13.31□□□□□ -0.28
LIG1-212ENST00000596549 CXorf51AA0A1B0GTR3 108 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 DDX3XO00571 662 aaKnown RBP eCLIP13.3□□□□□ -0.282e-12■■■□□ 16.8
LIG1-212ENST00000596549 RAMP2O60895 175 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 RNGTTO60942 597 aaKnown RBP13.3□□□□□ -0.28
LIG1-212ENST00000596549 KRT37O76014 449 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 DKK1O94907 266 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 PROS1P07225 676 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 CCDC172P0C7W6 258 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 EPHA8P29322 1005 aaPredicted RBP13.3□□□□□ -0.28
LIG1-212ENST00000596549 L1CAMP32004 1257 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 GKP32189 559 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 ETFBP38117 255 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 PBX1P40424 430 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 MAMLD1Q13495 774 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms