RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 POLD3Q15054 466 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 PARP15Q460N3 678 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 FAM72AQ5TYM5 149 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 FAM72DQ6L9T8 149 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 PSAPL1Q6NUJ1 521 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 LINGO4Q6UY18 593 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 ADAT2Q7Z6V5 191 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 FAM72BQ86X60 149 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 ARHGEF2Q92974 986 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 LRIG1Q96JA1 1093 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 TSPY26PQ9H489 355 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 PREBQ9HCU5 417 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 IL36AQ9UHA7 158 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 DNAI1Q9UI46 699 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 DMTF1Q9Y222 760 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 ADAMTS9Q9P2N4 1935 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 CHD5Q8TDI0 1954 aa18.11■□□□□ 0.49
SHKBP1-204ENST00000594862 LAMA1P25391 3075 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 WASH4PA8MWX3 477 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 C10orf142B7Z368 130 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 CREB3O43889 395 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 PRPSAP2O60256 369 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 DFNA5O60443 496 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 SKILP12757 684 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 TPI1P60174 286 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 ARF5P84085 180 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 HGSNATQ68CP4 663 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 NEK5Q6P3R8 708 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 PRPF39Q86UA1 669 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 TRIM69Q86WT6 500 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 FSCN3Q9NQT6 498 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 AP4E1Q9UPM8 1137 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 PCDHGB2Q9Y5G2 931 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 ZFHX4Q86UP3 3567 aa18.1■□□□□ 0.49
SHKBP1-204ENST00000594862 TBC1D3DA0A087WVF3 549 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 TBC1D3IA0A087WXS9 549 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 TBC1D3EA0A087X179 549 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 TBC1D3KA0A087X1G2 549 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 TBC1D3FA6NER0 549 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 TBC1D3LB9A6J9 549 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 K7ERQ8 282 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 KPNA3O00505 521 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 ATMINO43313 823 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 SMAD6O43541 496 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 LATO43561 262 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 KDELR3O43731 214 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 GJB3O75712 270 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 TPM1P09493 284 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 TBC1D3HP0C7X1 549 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 GLDCP23378 1020 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 C21orf59P57076 290 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 OGDHQ02218 1023 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 CNTN1Q12860 1018 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 NUMA1Q14980 2115 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 AGBL4Q5VU57 503 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 TBC1D3GQ6DHY5 549 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 TBC1D3CQ6IPX1 549 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 PIP4P1Q86T03 277 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 ZSCAN30Q86W11 494 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 TBC1D3Q8IZP1 549 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 HEPHQ9BQS7 1158 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 XPO4Q9C0E2 1151 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 GAREM1Q9H706 876 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 SARDHQ9UL12 918 aa18.09■□□□□ 0.49
SHKBP1-204ENST00000594862 A0A1B0GVT2 93 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 VILLO15195 856 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 GSRP00390 522 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 GYPCP04921 128 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 PCK1P35558 622 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 ACVRL1P37023 503 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 CSNK1EP49674 416 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 SNRPD1P62314 119 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 ZNF252P-AS1Q0IIN9 211 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 SETMARQ53H47 684 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 CARD16Q5EG05 197 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 ERMARDQ5T6L9 678 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 NAPEPLDQ6IQ20 393 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 ZNF354CQ86Y25 554 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 UMODL1-AS1Q8N2C9 162 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 DEFB124Q8NES8 71 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 CPLX3Q8WVH0 158 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 ORAI3Q9BRQ5 295 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 OSBPL1AQ9BXW6 950 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 HDAC8Q9BY41 377 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 TNKS2Q9H2K2 1166 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 ANKRD6Q9Y2G4 727 aa18.08■□□□□ 0.48
SHKBP1-204ENST00000594862 USP24Q9UPU5 2620 aa18.07■□□□□ 0.48
SHKBP1-204ENST00000594862 EEF2KO00418 725 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-204ENST00000594862 MAGEC1O60732 1142 aa18.07■□□□□ 0.48
SHKBP1-204ENST00000594862 RNGTTO60942 597 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-204ENST00000594862 CTSLP07711 333 aa18.07■□□□□ 0.48
SHKBP1-204ENST00000594862 ITGB7P26010 798 aa18.07■□□□□ 0.48
SHKBP1-204ENST00000594862 HNRNPH3P31942 346 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-204ENST00000594862 DNA2P51530 1060 aa18.07■□□□□ 0.48
SHKBP1-204ENST00000594862 CCNHP51946 323 aaPredicted RBP18.07■□□□□ 0.48
SHKBP1-204ENST00000594862 NEK3P51956 506 aa18.07■□□□□ 0.48
SHKBP1-204ENST00000594862 NDST2P52849 883 aa18.07■□□□□ 0.48
SHKBP1-204ENST00000594862 OVGP1Q12889 678 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms