RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 SLC6A18Q96N87 628 aa15.59■□□□□ 0.09
TRIM28-203ENST00000593582 IL21RQ9HBE5 538 aa15.59■□□□□ 0.09
TRIM28-203ENST00000593582 TM7SF3Q9NS93 570 aa15.59■□□□□ 0.09
TRIM28-203ENST00000593582 IL36AQ9UHA7 158 aa15.59■□□□□ 0.09
TRIM28-203ENST00000593582 FZD10Q9ULW2 581 aa15.59■□□□□ 0.09
TRIM28-203ENST00000593582 NEU3Q9UQ49 428 aa15.59■□□□□ 0.09
TRIM28-203ENST00000593582 FNDC3AQ9Y2H6 1198 aaKnown RBP15.59■□□□□ 0.09
TRIM28-203ENST00000593582 SNX11Q9Y5W9 270 aa15.59■□□□□ 0.09
TRIM28-203ENST00000593582 BZW2Q9Y6E2 419 aaKnown RBP15.59■□□□□ 0.09
TRIM28-203ENST00000593582 A0A1W2PQJ5 194 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 DDX3XO00571 662 aaKnown RBP eCLIP15.58■□□□□ 0.083e-21■■□□□ 12.4
TRIM28-203ENST00000593582 ATMINO43313 823 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-203ENST00000593582 LATO43561 262 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 CREB3O43889 395 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 SH3BP5O60239 455 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 CTSLP07711 333 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 DNA2P51530 1060 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 SIM1P81133 766 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-203ENST00000593582 SHC2P98077 582 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 OGDHQ02218 1023 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 ARSIQ5FYB1 569 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 LAYNQ6UX15 382 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 DPY19L3Q6ZPD9 716 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 PRPF39Q86UA1 669 aaKnown RBP15.58■□□□□ 0.08
TRIM28-203ENST00000593582 ZNF354CQ86Y25 554 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 NAXDQ8IW45 347 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 CHST14Q8NCH0 376 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 GRIN3AQ8TCU5 1115 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 SYN2Q92777 582 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-203ENST00000593582 ARHGEF2Q92974 986 aaKnown RBP15.58■□□□□ 0.08
TRIM28-203ENST00000593582 IQCDQ96DY2 449 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 TRIM11Q96F44 468 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 PPP1R16AQ96I34 528 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 SERAC1Q96JX3 654 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 CATSPERBQ9H7T0 1116 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 EBF2Q9HAK2 575 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 AASDHPPTQ9NRN7 309 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 CNOT8Q9UFF9 292 aaKnown RBP15.58■□□□□ 0.08
TRIM28-203ENST00000593582 PCDHB9Q9Y5E1 797 aa15.58■□□□□ 0.08
TRIM28-203ENST00000593582 DOCK4Q8N1I0 1966 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 SPAARA0A1B0GVQ0 90 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 C10orf142B7Z368 130 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 VILLO15195 856 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 ZNF821O75541 412 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-203ENST00000593582 LEFTY1O75610 366 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 MYBL1P10243 752 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 CD38P28907 300 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 NUDT1P36639 197 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 PBX1P40424 430 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 PPP2CBP62714 309 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 PPP2CAP67775 309 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 SUZ12Q15022 739 aaKnown RBP15.57■□□□□ 0.08
TRIM28-203ENST00000593582 TDRD12Q587J7 1177 aaKnown RBP15.57■□□□□ 0.08
TRIM28-203ENST00000593582 SLC45A4Q5BKX6 768 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 CARD16Q5EG05 197 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 PIP5KL1Q5T9C9 394 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 VPS36Q86VN1 386 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 RTL3Q8N8U3 475 aaKnown RBP15.57■□□□□ 0.08
TRIM28-203ENST00000593582 SETD7Q8WTS6 366 aaKnown RBP15.57■□□□□ 0.08
TRIM28-203ENST00000593582 ISG20Q96AZ6 181 aaKnown RBP15.57■□□□□ 0.08
TRIM28-203ENST00000593582 ZNF653Q96CK0 615 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 CNTNAP3BQ96NU0 1288 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 CAMK1GQ96NX5 476 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 HEPHQ9BQS7 1158 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 CNTNAP3Q9BZ76 1288 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 PREBQ9HCU5 417 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 MRPL47Q9HD33 250 aaKnown RBP15.57■□□□□ 0.08
TRIM28-203ENST00000593582 DONSONQ9NYP3 566 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 FCF1Q9Y324 198 aaKnown RBP15.57■□□□□ 0.08
TRIM28-203ENST00000593582 PCDHGB2Q9Y5G2 931 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 SCINQ9Y6U3 715 aa15.57■□□□□ 0.08
TRIM28-203ENST00000593582 NYNRINQ9P2P1 1898 aaKnown RBP15.57■□□□□ 0.08
TRIM28-203ENST00000593582 SPEGQ15772 3267 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 TMEM191CA6NGB0 347 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 ZSCAN5CA6NGD5 496 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-203ENST00000593582 FGF10O15520 208 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-203ENST00000593582 KDELR3O43731 214 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 DFNA5O60443 496 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 RNF8O76064 485 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 TPM3P06753 285 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 MAT2AP31153 395 aaKnown RBP15.56■□□□□ 0.08
TRIM28-203ENST00000593582 HTR7P34969 479 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 CTSKP43235 329 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 CCNHP51946 323 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-203ENST00000593582 TPI1P60174 286 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 FOXC1Q12948 553 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 TRIP6Q15654 476 aaKnown RBP15.56■□□□□ 0.08
TRIM28-203ENST00000593582 SETMARQ53H47 684 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-203ENST00000593582 KCNT1Q5JUK3 1230 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 TRIM69Q86WT6 500 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 DNAAF5Q86Y56 855 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 PLPP6Q8IY26 295 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 FNIP1Q8TF40 1166 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 CPLX3Q8WVH0 158 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.56■□□□□ 0.08
TRIM28-203ENST00000593582 HDAC8Q9BY41 377 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 IFNKQ9P0W0 207 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 HECAQ9UBI9 543 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-203ENST00000593582 CAPN11Q9UMQ6 739 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 AP4E1Q9UPM8 1137 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms