RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 TRIM60Q495X7 471 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 SPOUT1Q5T280 376 aaKnown RBP11.45□□□□□ -0.58
LIG3-204ENST00000585740 CERCAMQ5T4B2 595 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 MARC1Q5VT66 337 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 RAP1GAP2Q684P5 730 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 FBXL22Q6P050 247 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 PKN3Q6P5Z2 889 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 PRSS55Q6UWB4 352 aaPredicted RBP11.45□□□□□ -0.58
LIG3-204ENST00000585740 ARHGAP36Q6ZRI8 547 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 OTOP3Q7RTS5 596 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 OTOAQ7RTW8 1153 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 TAS1R1Q7RTX1 841 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 DEFB128Q7Z7B8 93 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 KCNMB4Q86W47 210 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 MIB1Q86YT6 1006 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 NUDCD3Q8IVD9 361 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 GPR65Q8IYL9 337 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 TEX26Q8N6G2 289 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 GIPC2Q8TF65 315 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 PLD4Q96BZ4 506 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 B3GALT6Q96L58 329 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 ZNF558Q96NG5 402 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 ZNF599Q96NL3 588 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 GUCD1Q96NT3 240 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 FCRL3Q96P31 734 aaPredicted RBP11.45□□□□□ -0.58
LIG3-204ENST00000585740 TRIM56Q9BRZ2 755 aaKnown RBP11.45□□□□□ -0.58
LIG3-204ENST00000585740 FICDQ9BVA6 458 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 FSD1LQ9BXM9 530 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 CRISPLD1Q9H336 500 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 PRDM6Q9NQX0 595 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 MPP6Q9NZW5 540 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 STK39Q9UEW8 545 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 MID2Q9UJV3 735 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 TBX21Q9UL17 535 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 SLC12A4Q9UP95 1085 aa11.45□□□□□ -0.58
LIG3-204ENST00000585740 HMX2A2RU54 273 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 C2CD2LO14523 706 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 TPP1O14773 563 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 ACSL4O60488 711 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 RAMP2O60895 175 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 SOAT2O75908 522 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 UPP2O95045 317 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 BPGMP07738 259 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 LAG3P18627 525 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 ATF6P18850 670 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 DNAJB1P25685 340 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 OR1D2P34982 312 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 ADRA1AP35348 466 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 MAGEA12P43365 314 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 DSG1Q02413 1049 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 LAMB3Q13751 1172 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 VEPH1Q14D04 833 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 POLD3Q15054 466 aaPredicted RBP11.44□□□□□ -0.58
LIG3-204ENST00000585740 CCDC153Q494R4 210 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 GALNTL6Q49A17 601 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 RABGAP1LQ5R372 815 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 HECTD3Q5T447 861 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 TEDDM1Q5T9Z0 273 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 TMCO4Q5TGY1 634 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.44□□□□□ -0.58
LIG3-204ENST00000585740 STRA8Q7Z7C7 330 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 LCA5Q86VQ0 697 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 TMEM173Q86WV6 379 aaPredicted RBP11.44□□□□□ -0.58
LIG3-204ENST00000585740 CMTR2Q8IYT2 770 aaKnown RBP11.44□□□□□ -0.58
LIG3-204ENST00000585740 BBS5Q8N3I7 341 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 ARMC2Q8NEN0 867 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 IPMKQ8NFU5 416 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 GPR152Q8TDT2 470 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 BCL7CQ8WUZ0 217 aaPredicted RBP11.44□□□□□ -0.58
LIG3-204ENST00000585740 C10orf82Q8WW14 230 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 SPOCK2Q92563 424 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 E2F7Q96AV8 911 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 TRMT2BQ96GJ1 504 aaKnown RBP11.44□□□□□ -0.58
LIG3-204ENST00000585740 TMEM169Q96HH4 297 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 FAM161BQ96MY7 647 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 C7orf26Q96N11 449 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 RPRD1AQ96P16 312 aaPredicted RBP11.44□□□□□ -0.58
LIG3-204ENST00000585740 RANBP9Q96S59 729 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 DDX50Q9BQ39 737 aaKnown RBP11.44□□□□□ -0.58
LIG3-204ENST00000585740 TUBB6Q9BUF5 446 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 SLC13A1Q9BZW2 595 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 C11orf49Q9H6J7 331 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 NOL6Q9H6R4 1146 aaKnown RBP11.44□□□□□ -0.58
LIG3-204ENST00000585740 ARNT2Q9HBZ2 717 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 SLCO1B3Q9NPD5 702 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 C20orf96Q9NUD7 363 aaPredicted RBP11.44□□□□□ -0.58
LIG3-204ENST00000585740 TXLNGQ9NUQ3 528 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 ABCF3Q9NUQ8 709 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 TMEM39AQ9NV64 488 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 NDFIP2Q9NV92 336 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 PIH1D1Q9NWS0 290 aaKnown RBP11.44□□□□□ -0.58
LIG3-204ENST00000585740 UBP1Q9NZI7 540 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 TRPM5Q9NZQ8 1165 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 SIRPGQ9P1W8 387 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 HCSTQ9UBK5 93 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 ANKRD6Q9Y2G4 727 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 TCAF1Q9Y4C2 921 aa11.44□□□□□ -0.58
LIG3-204ENST00000585740 SPTBN5Q9NRC6 3674 aaKnown RBP11.44□□□□□ -0.58
LIG3-204ENST00000585740 ABLIM3O94929 683 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 UBOX5O94941 541 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms