RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ADRA1BP35368 520 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 CCDC15Q0P6D6 951 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 BNIP3Q12983 259 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 CAMK2BQ13554 666 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 NEK5Q6P3R8 708 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 TRIM72Q6ZMU5 477 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 SPATS2Q86XZ4 545 aaKnown RBP20.93■□□□□ 0.94
SHMT1-209ENST00000582653 DRC7Q8IY82 874 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 CHST14Q8NCH0 376 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 TMIEQ8NEW7 156 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 MDM1Q8TC05 714 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 PREBQ9HCU5 417 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 LHX6Q9UPM6 363 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 DAAM1Q9Y4D1 1078 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 ILVBLA1L0T0 632 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 FAM72CH0Y354 149 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 PRAMEF26H0Y7S4 382 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 ENC1O14682 589 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 RNGTTO60942 597 aaKnown RBP20.92■□□□□ 0.94
SHMT1-209ENST00000582653 ATP1A3P13637 1013 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 EPHA8P29322 1005 aaPredicted RBP20.92■□□□□ 0.94
SHMT1-209ENST00000582653 SDC4P31431 198 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 RFC1P35251 1148 aaPredicted RBP20.92■□□□□ 0.94
SHMT1-209ENST00000582653 CLCN6P51797 869 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 TAS2R38P59533 333 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 CLEC16AQ2KHT3 1053 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 SETMARQ53H47 684 aaPredicted RBP20.92■□□□□ 0.94
SHMT1-209ENST00000582653 CCDC183Q5T5S1 534 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 FAM72AQ5TYM5 149 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 FAM72DQ6L9T8 149 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 DHRS13Q6UX07 377 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 TMPRSS12Q86WS5 348 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 FAM72BQ86X60 149 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 AOPEPQ8N6M6 819 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 CNDP2Q96KP4 475 aaKnown RBP20.92■□□□□ 0.94
SHMT1-209ENST00000582653 CCDC114Q96M63 670 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 ADAM22Q9P0K1 906 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 OR12D3Q9UGF7 316 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 GPSM3Q9Y4H4 160 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 ACTL7AQ9Y615 435 aa20.92■□□□□ 0.94
SHMT1-209ENST00000582653 KPNA3O00505 521 aaPredicted RBP20.91■□□□□ 0.94
SHMT1-209ENST00000582653 ZNF821O75541 412 aaPredicted RBP20.91■□□□□ 0.94
SHMT1-209ENST00000582653 ZMPSTE24O75844 475 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 KRT3P12035 628 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 NSFP46459 744 aaKnown RBP20.91■□□□□ 0.94
SHMT1-209ENST00000582653 SLC20A2Q08357 652 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 CCDC157Q569K6 752 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 PIP5KL1Q5T9C9 394 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 ZNF783Q6ZMS7 281 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 MARCH9Q86YJ5 346 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 EID2Q8N6I1 236 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 PDCD7Q8N8D1 485 aaKnown RBP20.91■□□□□ 0.94
SHMT1-209ENST00000582653 ARRDC3Q96B67 414 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 ERGIC2Q96RQ1 377 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 ATP13A1Q9HD20 1204 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 NDFIP2Q9NV92 336 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 SEPT11Q9NVA2 429 aaKnown RBP20.91■□□□□ 0.94
SHMT1-209ENST00000582653 TMEM63CQ9P1W3 806 aa20.91■□□□□ 0.94
SHMT1-209ENST00000582653 PPARGC1AQ9UBK2 798 aaKnown RBP20.91■□□□□ 0.94
SHMT1-209ENST00000582653 FAM149AA5PLN7 773 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 MBD3O95983 291 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 PRNPP04156 253 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 ACVRL1P37023 503 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 PTPN9P43378 593 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 HDAC4P56524 1084 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 ARF5P84085 180 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 GNA12Q03113 381 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 TYRO3Q06418 890 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 ARL13BQ3SXY8 428 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 ARSIQ5FYB1 569 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 RWDD4Q6NW29 188 aaKnown RBP20.9■□□□□ 0.94
SHMT1-209ENST00000582653 C22orf39Q6P5X5 142 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 KANSL1Q7Z3B3 1105 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 PHF13Q86YI8 300 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-209ENST00000582653 CCDC185Q8N715 623 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 FAM172AQ8WUF8 416 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 TSC1Q92574 1164 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 CENPIQ92674 756 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-209ENST00000582653 AGPAT1Q99943 283 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 SELENOOQ9BVL4 669 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 CA5BQ9Y2D0 317 aa20.9■□□□□ 0.94
SHMT1-209ENST00000582653 COL5A1P20908 1838 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-209ENST00000582653 DSPP15924 2871 aaKnown RBP20.89■□□□□ 0.94
SHMT1-209ENST00000582653 MANEALQ5VSG8 457 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 SFMBT2Q5VUG0 894 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 RETSATQ6NUM9 610 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 WDR59Q6PJI9 974 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 DPY19L3Q6ZPD9 716 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 STRADAQ7RTN6 431 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 GRIN3AQ8TCU5 1115 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 KLK6Q92876 244 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 KLHDC7BQ96G42 594 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 OSBPL2Q9H1P3 480 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 IL36AQ9UHA7 158 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 DNAI1Q9UI46 699 aa20.89■□□□□ 0.93
SHMT1-209ENST00000582653 FAM208BQ5VWN6 2430 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 TEX33O43247 280 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 CD160O95971 181 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 GPD1P21695 349 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 SERPINH1P50454 418 aaKnown RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms