RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 TMEM92Q6UXU6 159 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 SYT10Q6XYQ8 523 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 NYAP1Q6ZVC0 841 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 BZW1Q7L1Q6 419 aaKnown RBP8.73□□□□□ -1.01
NUP88-211ENST00000575976 SYT13Q7L8C5 426 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 TRMT11Q7Z4G4 463 aaKnown RBP8.73□□□□□ -1.01
NUP88-211ENST00000575976 ADAT2Q7Z6V5 191 aaKnown RBP8.73□□□□□ -1.01
NUP88-211ENST00000575976 SLC13A5Q86YT5 568 aaPredicted RBP8.73□□□□□ -1.01
NUP88-211ENST00000575976 LRRC49Q8IUZ0 686 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 SPEM1Q8N4L4 309 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 ATPAF2Q8N5M1 289 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 KDM1BQ8NB78 822 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 CCNYQ8ND76 341 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 ACTL9Q8TC94 416 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 FRS2Q8WU20 508 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 P3H4Q92791 437 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 PTPRN2Q92932 1015 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 HDAC11Q96DB2 347 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 MS4A14Q96JA4 679 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 PBKQ96KB5 322 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 OLFM3Q96PB7 478 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 TSGA13Q96PP4 275 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 OSBPL9Q96SU4 736 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 NAPGQ99747 312 aaPredicted RBP8.73□□□□□ -1.01
NUP88-211ENST00000575976 GABRG3Q99928 467 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 FAM118BQ9BPY3 351 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 UBA2Q9UBT2 640 aaPredicted RBP8.73□□□□□ -1.01
NUP88-211ENST00000575976 SUN2Q9UH99 717 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 MMP17Q9ULZ9 603 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 SNX12Q9UMY4 172 aa8.73□□□□□ -1.01
NUP88-211ENST00000575976 FCF1Q9Y324 198 aaKnown RBP8.73□□□□□ -1.01
NUP88-211ENST00000575976 CHD5Q8TDI0 1954 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 A0A1W2PQF6 199 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 CTAGE9A4FU28 777 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 PPP1R12AO14974 1030 aaPredicted RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 ZNF185O15231 689 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 BNIP3LO60238 219 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 SIN3BO75182 1162 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 ZNF821O75541 412 aaPredicted RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 TMCC1O94876 653 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 EPHX1P07099 455 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 CCNCP24863 283 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 CASQ1P31415 396 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 DEKP35659 375 aaKnown RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 CXCL12P48061 93 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 CLCN6P51797 869 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 GEMIN4P57678 1058 aaKnown RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 SATB1Q01826 763 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 PPIDQ08752 370 aaKnown RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 SLC10A7Q0GE19 358 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 PDK1Q15118 436 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 SIX1Q15475 284 aaPredicted RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 CRY1Q16526 586 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 LONRF2Q1L5Z9 754 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 HNRNPA1L2Q32P51 320 aaKnown RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 INO80DQ53TQ3 878 aaPredicted RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 FAM182AQ5T1J6 154 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 PAPD7Q5XG87 772 aaKnown RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 TIGD7Q6NT04 549 aaPredicted RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 C22orf39Q6P5X5 142 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 Q6ZVU0 165 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 ZC3H18Q86VM9 953 aaKnown RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 CCDC13Q8IYE1 715 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 RASGEF1CQ8N431 466 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 COG1Q8WTW3 980 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 CASKIN2Q8WXE0 1202 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 C16orf45Q96MC5 204 aaPredicted RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 ZNF599Q96NL3 588 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 LGMNQ99538 433 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 IER2Q9BTL4 223 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 TM6SF2Q9BZW4 377 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 TNKS2Q9H2K2 1166 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 C10orf88Q9H8K7 445 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 CD248Q9HCU0 757 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 PRSS16Q9NQE7 514 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 SPATA6Q9NWH7 488 aaPredicted RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 SLC8A2Q9UPR5 921 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 R3HDM2Q9Y2K5 976 aaKnown RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 NYNRINQ9P2P1 1898 aaKnown RBP8.72□□□□□ -1.01
NUP88-211ENST00000575976 DCHS1Q96JQ0 3298 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 PKD1L2Q7Z442 2459 aa8.72□□□□□ -1.01
NUP88-211ENST00000575976 NUP205Q92621 2012 aa8.71□□□□□ -1.01
NUP88-211ENST00000575976 ATG2BQ96BY7 2078 aa8.71□□□□□ -1.01
NUP88-211ENST00000575976 RIF1Q5UIP0 2472 aaKnown RBP8.71□□□□□ -1.01
NUP88-211ENST00000575976 EDDM13A0A1B0GTR0 161 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 TARSL2A2RTX5 802 aaKnown RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 PRR23AA6NEV1 266 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 H0Y858 1186 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 H7C0C1 242 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 CES2O00748 559 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 MATN3O15232 486 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 SYNCRIPO60506 623 aaKnown RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 FGGP02679 453 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 RBP3P10745 1247 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 PRLRP16471 622 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 TCP1P17987 556 aaKnown RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 ATP5OP48047 213 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 EIF3EP60228 445 aaKnown RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 RHOAP61586 193 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 AP1B1Q10567 949 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms