RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 COG7P83436 770 aa23.14■■□□□ 1.3
VPS53-211ENST00000571805 TBL3Q12788 808 aaKnown RBP23.14■■□□□ 1.3
VPS53-211ENST00000571805 EIF4EBP2Q13542 120 aaPredicted RBP23.14■■□□□ 1.3
VPS53-211ENST00000571805 PKN3Q6P5Z2 889 aa23.14■■□□□ 1.3
VPS53-211ENST00000571805 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP23.14■■□□□ 1.3
VPS53-211ENST00000571805 SLC26A7Q8TE54 656 aa23.14■■□□□ 1.3
VPS53-211ENST00000571805 JADE3Q92613 823 aa23.14■■□□□ 1.3
VPS53-211ENST00000571805 DNAH12Q6ZR08 3092 aa23.14■■□□□ 1.3
VPS53-211ENST00000571805 GLTPD2A6NH11 291 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 CASTOR2A6NHX0 329 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 TARM1B6A8C7 271 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 CABYRO75952 493 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 SRGAP2BP0DMP2 458 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 CCNCP24863 283 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 MTTPP55157 894 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 USP10Q14694 798 aaKnown RBP23.14■■□□□ 1.29
VPS53-211ENST00000571805 UPP1Q16831 310 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 PCID2Q5JVF3 399 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 TAF2Q6P1X5 1199 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 FAM171BQ6P995 826 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 AGMOQ6ZNB7 445 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 ARHGAP12Q8IWW6 846 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 EFCAB3Q8N7B9 438 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 RNF34Q969K3 372 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 CCDC124Q96CT7 223 aaKnown RBP23.14■■□□□ 1.29
VPS53-211ENST00000571805 WDR55Q9H6Y2 383 aaPredicted RBP23.14■■□□□ 1.29
VPS53-211ENST00000571805 SPON1Q9HCB6 807 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 ADAMTS6Q9UKP5 1117 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 CLEC11AQ9Y240 323 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 SSX2IPQ9Y2D8 614 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 AAR2Q9Y312 384 aaKnown RBP23.14■■□□□ 1.29
VPS53-211ENST00000571805 Q9Y3F1 56 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 BPTFQ12830 3046 aa23.14■■□□□ 1.29
VPS53-211ENST00000571805 IGLV3-25P01717 112 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 SAT1P21673 171 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 RPL14P50914 215 aaKnown RBP23.13■■□□□ 1.29
VPS53-211ENST00000571805 SCNN1GP51170 649 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 ASPHQ12797 758 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 HNRNPDQ14103 355 aaKnown RBP23.13■■□□□ 1.29
VPS53-211ENST00000571805 DENND5AQ6IQ26 1287 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 PHC3Q8NDX5 983 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 STYXQ8WUJ0 223 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 SLC24A3Q9HC58 644 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 RUVBL2Q9Y230 463 aaKnown RBP23.13■■□□□ 1.29
VPS53-211ENST00000571805 GOLGA8QA0A0J9YX86 632 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 GOLGA8OA6NCC3 632 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 GOLGA8NF8WBI6 632 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 HDAC3O15379 428 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 GRID2O43424 1007 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 MT-CYBP00156 380 aaPredicted RBP23.13■■□□□ 1.29
VPS53-211ENST00000571805 BDNFP23560 247 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 PPP2R5DQ14738 602 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 FSCN1Q16658 493 aaKnown RBP23.13■■□□□ 1.29
VPS53-211ENST00000571805 ARL13AQ5H913 290 aaPredicted RBP23.13■■□□□ 1.29
VPS53-211ENST00000571805 RWDD4Q6NW29 188 aaKnown RBP23.13■■□□□ 1.29
VPS53-211ENST00000571805 LCA5Q86VQ0 697 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 CNTN4Q8IWV2 1026 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 CENPLQ8N0S6 344 aaPredicted RBP23.13■■□□□ 1.29
VPS53-211ENST00000571805 SCML4Q8N228 414 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 KCTD4Q8WVF5 259 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 CNDP1Q96KN2 507 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 FCRL5Q96RD9 977 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 TBL1YQ9BQ87 522 aa23.13■■□□□ 1.29
VPS53-211ENST00000571805 DFFAO00273 331 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 RPL9P32969 192 aaKnown RBP23.12■■□□□ 1.29
VPS53-211ENST00000571805 PRKAA2P54646 552 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 SLC12A1Q13621 1099 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 TCHHL1Q5QJ38 904 aaPredicted RBP23.12■■□□□ 1.29
VPS53-211ENST00000571805 IL12RB2Q99665 862 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 TMLHEQ9NVH6 421 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 ZDHHC7Q9NXF8 308 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 ARHGEF38Q9NXL2 777 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 PIGNO95427 931 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 AVPR1AP37288 418 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 GLRBP48167 497 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 ARCN1P48444 511 aaKnown RBP23.12■■□□□ 1.29
VPS53-211ENST00000571805 LSM12Q3MHD2 195 aaKnown RBP23.12■■□□□ 1.29
VPS53-211ENST00000571805 ARTNQ5T4W7 220 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 RNF220Q5VTB9 566 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 SLC41A1Q8IVJ1 513 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 FSTL5Q8N475 847 aaPredicted RBP23.12■■□□□ 1.29
VPS53-211ENST00000571805 SIK2Q9H0K1 926 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 GLOD4Q9HC38 313 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 ZDHHC2Q9UIJ5 367 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 TRPV2Q9Y5S1 764 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 TRPM7Q96QT4 1865 aa23.12■■□□□ 1.29
VPS53-211ENST00000571805 DDHD2O94830 711 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 LYNP07948 512 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 COL6A2P12110 1019 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 TFEBP19484 476 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 YY1P25490 414 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 PIK3R1P27986 724 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 CYP2C18P33260 490 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 SERPINB5P36952 375 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 HK2P52789 917 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 NAGLUP54802 743 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 SEL1L3Q68CR1 1132 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 PDSS2Q86YH6 399 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 MFSD6LQ8IWD5 586 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 DENND6AQ8IWF6 608 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms