RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PRNPP04156 253 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 TRIM49P0CI25 452 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 TRIM49CP0CI26 452 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 SETSIPP0DME0 302 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 RECQLP46063 649 aaPredicted RBP11.35□□□□□ -0.59
VPS53-207ENST00000570510 RGS7P49802 495 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 MAPK10P53779 464 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 RPS21P63220 83 aaKnown RBP11.35□□□□□ -0.59
VPS53-207ENST00000570510 C1orf61Q13536 156 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 PTK2BQ14289 1009 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 RABGAP1LQ5R372 815 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 PIP5KL1Q5T9C9 394 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 FAXCQ5TGI0 409 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 SEL1L3Q68CR1 1132 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 HIST2H2BCQ6DN03 193 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 KYAT3Q6YP21 454 aaKnown RBP11.35□□□□□ -0.59
VPS53-207ENST00000570510 INTS8Q75QN2 995 aaKnown RBP11.35□□□□□ -0.59
VPS53-207ENST00000570510 B3GNT8Q7Z7M8 397 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 ZFAND4Q86XD8 727 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 SLC35F3Q8IY50 421 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 IRGQQ8WZA9 623 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 FAM149B1Q96BN6 582 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 MYEOVQ96EZ4 313 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 CMKLR1Q99788 373 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 BOCQ9BWV1 1114 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 TMPRSS4Q9NRS4 437 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 EXOC1Q9NV70 894 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 AKAP7Q9P0M2 348 aaPredicted RBP11.35□□□□□ -0.59
VPS53-207ENST00000570510 VPS28Q9UK41 221 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 LOXL2Q9Y4K0 774 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 TEP1Q99973 2627 aaKnown RBP11.35□□□□□ -0.59
VPS53-207ENST00000570510 CLEC18AA5D8T8 446 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 D6RAR5 112 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 PDXKO00764 312 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 NEMP1O14524 444 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 ATP9BO43861 1147 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 RPLP0P05388 317 aaKnown RBP11.34□□□□□ -0.59
VPS53-207ENST00000570510 TACR2P21452 398 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 CASP1P29466 404 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 CHRNA3P32297 505 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 ATP1A2P50993 1020 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 PDX1P52945 283 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 YWHAEP62258 255 aaKnown RBP11.34□□□□□ -0.59
VPS53-207ENST00000570510 TTC39BQ5VTQ0 682 aaPredicted RBP11.34□□□□□ -0.59
VPS53-207ENST00000570510 KRT39Q6A163 491 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 CLEC18BQ6UXF7 455 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 ERN2Q76MJ5 926 aaKnown RBP11.34□□□□□ -0.59
VPS53-207ENST00000570510 CCAR2Q8N163 923 aaKnown RBP11.34□□□□□ -0.59
VPS53-207ENST00000570510 SCML4Q8N228 414 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 ATP11CQ8NB49 1132 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 CLEC18CQ8NCF0 446 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 C9orf43Q8TAL5 461 aaPredicted RBP11.34□□□□□ -0.59
VPS53-207ENST00000570510 SPATA20Q8TB22 786 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 HTR3CQ8WXA8 447 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 JPH3Q8WXH2 748 aaPredicted RBP11.34□□□□□ -0.59
VPS53-207ENST00000570510 CCDC47Q96A33 483 aaKnown RBP11.34□□□□□ -0.59
VPS53-207ENST00000570510 TMEM159Q96B96 161 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 FCRL2Q96LA5 508 aaPredicted RBP11.34□□□□□ -0.59
VPS53-207ENST00000570510 BMFQ96LC9 184 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 FUCA2Q9BTY2 467 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 CPEB1Q9BZB8 566 aaKnown RBP11.34□□□□□ -0.59
VPS53-207ENST00000570510 MIS12Q9H081 205 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 TMEM8AQ9HCN3 771 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 ZNF71Q9NQZ8 489 aaPredicted RBP11.34□□□□□ -0.59
VPS53-207ENST00000570510 SIRPGQ9P1W8 387 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 TUBD1Q9UJT1 453 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 PLAAQ9Y263 795 aa11.34□□□□□ -0.59
VPS53-207ENST00000570510 USP9YO00507 2555 aaPredicted RBP11.33□□□□□ -0.6
VPS53-207ENST00000570510 RELNP78509 3460 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 A0A1W2PQC6 194 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 LMO7DNF2Z398 122 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 NTN3O00634 580 aaPredicted RBP11.33□□□□□ -0.6
VPS53-207ENST00000570510 ITIH1P19827 911 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 CD82P27701 267 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 SYKP43405 635 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 KRT83P78385 493 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 CCL7P80098 99 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 PPP3CAQ08209 521 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 NNTQ13423 1086 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 KIAA1161Q6NSJ0 714 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 CIR1Q86X95 450 aaPredicted RBP11.33□□□□□ -0.6
VPS53-207ENST00000570510 SDR16C5Q8N3Y7 309 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 IL22RA1Q8N6P7 574 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 ATP6V0D2Q8N8Y2 350 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 FBXL13Q8NEE6 735 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 TMIEQ8NEW7 156 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 GRIN3AQ8TCU5 1115 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 USP7Q93009 1102 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 CCDC74AQ96AQ1 378 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 FAXDC2Q96IV6 333 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 BTN2A3PQ96KV6 586 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 MUC3BQ9H195 1237 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 KLF15Q9UIH9 416 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 HOOK1Q9UJC3 728 aaKnown RBP11.33□□□□□ -0.6
VPS53-207ENST00000570510 ZFR2Q9UPR6 939 aaKnown RBP11.33□□□□□ -0.6
VPS53-207ENST00000570510 NBPF19A0A087WUL8 3843 aa11.33□□□□□ -0.6
VPS53-207ENST00000570510 KIF26BQ2KJY2 2108 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 GOLGA6L4A6NEF3 574 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 TCAF2A6NFQ2 919 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 STMND1H3BQB6 276 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms