RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 DNAJB1P25685 340 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 CD86P42081 329 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 CCT5P48643 541 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 MAPKAPK2P49137 400 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 GEMP55040 296 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 GNA12Q03113 381 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 DMTNQ08495 405 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 ZNF235Q14590 738 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 PARP15Q460N3 678 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 PPM1LQ5SGD2 360 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 STXBP5Q5T5C0 1151 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 CPLX4Q7Z7G2 160 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 LINC00523Q86TU6 105 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 CCNJLQ8IV13 435 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 CARNMT1Q8N4J0 409 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 PRICKLE1Q96MT3 831 aaPredicted RBP7.19□□□□□ -1.26
SMG1-215ENST00000568239 TBL1YQ9BQ87 522 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 NAT9Q9BTE0 207 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 SMG9Q9H0W8 520 aaKnown RBP7.19□□□□□ -1.26
SMG1-215ENST00000568239 IL21Q9HBE4 155 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 HCFC1R1Q9NWW0 138 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 SENP1Q9P0U3 644 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 ZFATQ9P243 1243 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 FETUBQ9UGM5 382 aa7.19□□□□□ -1.26
SMG1-215ENST00000568239 LINC01553A4QN01 128 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 TRIM49D1C9J1S8 452 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 H0Y626 953 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 PER2O15055 1255 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 PSMD3O43242 534 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 KRT37O76014 449 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 SUN1O94901 812 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 F7P08709 466 aaPredicted RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 GSTA2P09210 222 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 PRKCHP24723 683 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 RPA3P35244 121 aaPredicted RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 IRS1P35568 1242 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 CHRNA4P43681 627 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 CDH4P55283 916 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 YBEYP58557 167 aaPredicted RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 ZXDBP98169 803 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 DSC2Q02487 901 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 SERINC3Q13530 473 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 SEPT6Q14141 434 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 LGSNQ5TDP6 509 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 ZNF697Q5TEC3 545 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 TTC39BQ5VTQ0 682 aaPredicted RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 FOXR1Q6PIV2 292 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 RBM23Q86U06 439 aaKnown RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 RASSF3Q86WH2 238 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 ZNF276Q8N554 614 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 MRPL43Q8N983 215 aaKnown RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 OR52K2Q8NGK3 314 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 ATXN2LQ8WWM7 1075 aaKnown RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 HERVK_113Q902F9 699 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 ATXN7L3BQ96GX2 97 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 CCT8L2Q96SF2 557 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 DHRS4Q9BTZ2 278 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 IL22Q9GZX6 179 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 CERS4Q9HA82 394 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 ATP13A1Q9HD20 1204 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 CASS4Q9NQ75 786 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 ASAH2Q9NR71 780 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 PLK2Q9NYY3 685 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 ASB3Q9Y575 518 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 ACTL7BQ9Y614 415 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 TYW5A2RUC4 315 aaKnown RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 C2orf71A6NGG8 1288 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 TBL1XO60907 577 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 CLDN11O75508 207 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 GJB3O75712 270 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 KRT38O76015 456 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 PEX11BO96011 259 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 C1RP00736 705 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 PYGBP11216 843 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 GLDCP23378 1020 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 IL10RBQ08334 325 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 LBRQ14739 615 aaKnown RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 TPGS1Q6ZTW0 290 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 RNF135Q8IUD6 432 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.18□□□□□ -1.26
SMG1-215ENST00000568239 SPPL3Q8TCT6 385 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 TMA16Q96EY4 203 aaKnown RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 CERS2Q96G23 380 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 EXOC2Q96KP1 924 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 ZNF778Q96MU6 729 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 FCRL3Q96P31 734 aaPredicted RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 DDX50Q9BQ39 737 aaKnown RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 SLC13A1Q9BZW2 595 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 C12orf65Q9H3J6 166 aaKnown RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 MOCS1Q9NZB8 636 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 ZNF212Q9UDV6 495 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 LSM7Q9UK45 103 aaKnown RBP7.18□□□□□ -1.26
SMG1-215ENST00000568239 SH3BP1Q9Y3L3 701 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 MIA3Q5JRA6 1907 aa7.18□□□□□ -1.26
SMG1-215ENST00000568239 A0A1B0GVM2 712 aa7.17□□□□□ -1.26
SMG1-215ENST00000568239 WDR91A4D1P6 747 aa7.17□□□□□ -1.26
SMG1-215ENST00000568239 TCAF2A6NFQ2 919 aa7.17□□□□□ -1.26
SMG1-215ENST00000568239 FAM159BA6NKW6 160 aa7.17□□□□□ -1.26
SMG1-215ENST00000568239 GRM6O15303 877 aa7.17□□□□□ -1.26
SMG1-215ENST00000568239 SNRPAP09012 282 aaKnown RBP7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms