RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PATL1Q86TB9 770 aaKnown RBP3.1□□□□□ -1.91
VPS35-207ENST00000568191 WDR5BQ86VZ2 330 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 PTGR2Q8N8N7 351 aaPredicted RBP3.1□□□□□ -1.91
VPS35-207ENST00000568191 MIGA1Q8NAN2 632 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 SLC2A12Q8TD20 617 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 OTULINQ96BN8 352 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 IGSF21Q96ID5 467 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 EPYCQ99645 322 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 C1QTNF4Q9BXJ3 329 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 HDHD5Q9BXW7 423 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 KLQ9UEF7 1012 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 FBXO40Q9UH90 709 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 CDC23Q9UJX2 597 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 DAPP1Q9UN19 280 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 OSGIN2Q9Y236 505 aa3.1□□□□□ -1.91
VPS35-207ENST00000568191 SMTNL1A8MU46 457 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 LGALS16A8MUM7 142 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 KDM4EB2RXH2 506 aaPredicted RBP3.09□□□□□ -1.91
VPS35-207ENST00000568191 SYT5O00445 386 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 KRT36O76013 467 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 TNFRSF6BO95407 300 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 ZBTB11O95625 1053 aaPredicted RBP3.09□□□□□ -1.91
VPS35-207ENST00000568191 DHRS4L1P0CG22 281 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 SETSIPP0DME0 302 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 TYK2P29597 1187 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 RFX5P48382 616 aaPredicted RBP3.09□□□□□ -1.91
VPS35-207ENST00000568191 MCM2P49736 904 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 CLCN5P51795 746 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 ERVFC1-1P60608 527 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 TUBA1BP68363 451 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 KIF5AQ12840 1032 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 COASYQ13057 564 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 HDAC1Q13547 482 aaPredicted RBP3.09□□□□□ -1.91
VPS35-207ENST00000568191 WBP2NLQ6ICG8 309 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 PRSS57Q6UWY2 283 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 USP43Q70EL4 1123 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 C16orf82Q7Z2V1 217 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 EXOC3L1Q86VI1 746 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 MYLK4Q86YV6 388 aaPredicted RBP3.09□□□□□ -1.91
VPS35-207ENST00000568191 SCN4BQ8IWT1 228 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 OTUD7AQ8TE49 926 aaPredicted RBP3.09□□□□□ -1.91
VPS35-207ENST00000568191 TMED6Q8WW62 240 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 ADAMTS14Q8WXS8 1223 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 HES6Q96HZ4 224 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 TRAPPC9Q96Q05 1148 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 SLC25A33Q9BSK2 321 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 MMTAG2Q9BU76 263 aaKnown RBP3.09□□□□□ -1.91
VPS35-207ENST00000568191 FRMD8Q9BZ67 464 aaPredicted RBP3.09□□□□□ -1.91
VPS35-207ENST00000568191 MDFICQ9P1T7 246 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 LRFN1Q9P244 771 aa3.09□□□□□ -1.91
VPS35-207ENST00000568191 PLEKHB1Q9UF11 243 aaPredicted RBP3.09□□□□□ -1.91
VPS35-207ENST00000568191 IGHV4-28A0A0C4DH34 117 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 CLEC18AA5D8T8 446 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 NPIPB13A6NJU9 1138 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 NPIPB5A8MRT5 1133 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 PRSS47A8MTI9 375 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 NPIPB4C9JG80 1138 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 HEXIM1O94992 359 aaKnown RBP3.08□□□□□ -1.92
VPS35-207ENST00000568191 DDAH2O95865 285 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 IL1AP01583 271 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 GYS1P13807 737 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 SERPINB3P29508 390 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 DPP6P42658 865 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 PUM3Q15397 648 aaKnown RBP3.08□□□□□ -1.92
VPS35-207ENST00000568191 GALNTL6Q49A17 601 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 OTUD3Q5T2D3 398 aaPredicted RBP3.08□□□□□ -1.92
VPS35-207ENST00000568191 TTC22Q5TAA0 569 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 C9orf57Q5W0N0 161 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 ATG9BQ674R7 924 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 TYW3Q6IPR3 259 aaKnown RBP3.08□□□□□ -1.92
VPS35-207ENST00000568191 KLHL24Q6TFL4 600 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 KIAA1324Q6UXG2 1013 aaKnown RBP3.08□□□□□ -1.92
VPS35-207ENST00000568191 TEX45Q8NA69 505 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 ATG16L2Q8NAA4 619 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 CLEC18CQ8NCF0 446 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 TBC1D22AQ8WUA7 517 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 NCSTNQ92542 709 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 MTBPQ96DY7 904 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 INPP4AQ96PE3 977 aaPredicted RBP3.08□□□□□ -1.92
VPS35-207ENST00000568191 FIZ1Q96SL8 496 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 DDX23Q9BUQ8 820 aaKnown RBP3.08□□□□□ -1.92
VPS35-207ENST00000568191 CLPBQ9H078 707 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 PRDM8Q9NQV8 689 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 DACT1Q9NYF0 836 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 NOTCH4Q99466 2003 aa3.08□□□□□ -1.92
VPS35-207ENST00000568191 A0A087WV62 115 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 A0A1B0GUV1 79 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 A0A1B0GVM2 712 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 OR6C68A6NDL8 312 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 LDB2O43679 373 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 HBP1O60381 514 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 SOX30O94993 753 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 CBX6O95503 412 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 SNRNP70P08621 437 aaKnown RBP3.07□□□□□ -1.92
VPS35-207ENST00000568191 CKMT1AP12532 417 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 CHN1P15882 459 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 RBM5P52756 815 aaKnown RBP eCLIP3.07□□□□□ -1.92
VPS35-207ENST00000568191 EEF1A2Q05639 463 aaKnown RBP3.07□□□□□ -1.92
VPS35-207ENST00000568191 ST3GAL1Q11201 340 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 DCTN1Q14203 1278 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms