RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 TTC31Q49AM3 519 aaPredicted RBP9.99□□□□□ -0.81
CLK3-220ENST00000567992 ACCSLQ4AC99 568 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 SLC36A4Q6YBV0 504 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 DPY19L3Q6ZPD9 716 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 ARHGAP36Q6ZRI8 547 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 USP30Q70CQ3 517 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 ARMCX6Q7L4S7 300 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 LPCAT2Q7L5N7 544 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 FAM124AQ86V42 546 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 DEFB119Q8N690 84 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 PCDH20Q8N6Y1 951 aaKnown RBP9.99□□□□□ -0.81
CLK3-220ENST00000567992 PCDH19Q8TAB3 1148 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 OR8D1Q8WZ84 308 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 ISG20Q96AZ6 181 aaKnown RBP9.99□□□□□ -0.81
CLK3-220ENST00000567992 FAF2Q96CS3 445 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 ZNF419Q96HQ0 510 aaPredicted RBP9.99□□□□□ -0.81
CLK3-220ENST00000567992 GPR174Q9BXC1 333 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 LACRTQ9GZZ8 138 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 ARRDC1-AS1Q9H2J1 176 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 GOLPH3Q9H4A6 298 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 RCOR3Q9P2K3 495 aaPredicted RBP9.99□□□□□ -0.81
CLK3-220ENST00000567992 SCML1Q9UN30 329 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 HYOU1Q9Y4L1 999 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 PCDHGA5Q9Y5G8 931 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 WASF2Q9Y6W5 498 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 PLXNA2O75051 1894 aa9.99□□□□□ -0.81
CLK3-220ENST00000567992 PTPRZ1P23471 2315 aaPredicted RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 SHROOM3Q8TF72 1996 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 A0A0U1RQJ8 604 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 A0A1W2PP55 124 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 ZSCAN5CA6NGD5 496 aaPredicted RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 C3orf70A6NLC5 250 aaPredicted RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 PLK4O00444 970 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 PJA2O43164 708 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 MAP3K13O43283 966 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 DAPK3O43293 454 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 MFSD11O43934 449 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 PRAMEF11O60813 436 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 RNASEH1O60930 286 aaKnown RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 LRP3O75074 770 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 TMCC1O94876 653 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 PEX11BO96011 259 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 ADH1BP00325 375 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 GSRP00390 522 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 IL1BP01584 269 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 KRT7P08729 469 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 ACADMP11310 421 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 C5AR1P21730 350 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 COMTP21964 271 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 ITPKAP23677 461 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 CHRNA3P32297 505 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 SLC8A1P32418 973 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 MPLP40238 635 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 ARL4AP40617 200 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 SSR1P43307 286 aaKnown RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 DHPSP49366 369 aaPredicted RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 PAPOLAP51003 745 aaKnown RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 CCNHP51946 323 aaPredicted RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 VAV2P52735 878 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 GEMIN4P57678 1058 aaKnown RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 CREB5Q02930 508 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 KRT81Q14533 505 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 CCDC6Q16204 474 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 INO80DQ53TQ3 878 aaPredicted RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 CARD16Q5EG05 197 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 LYSMD4Q5XG99 296 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 NCBP2-AS2Q69YL0 99 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 PQLC3Q8N755 202 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 PIP4K2CQ8TBX8 421 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 RAPGEF5Q92565 580 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 ARRDC3Q96B67 414 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 HSPA12BQ96MM6 686 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 ZNF670Q9BS34 389 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 DESI2Q9BSY9 194 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 SMOC1Q9H4F8 434 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 C6orf106Q9H6K1 298 aaPredicted RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 SEMA4GQ9NTN9 838 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 TMEM74BQ9NUR3 256 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 FBXL12Q9NXK8 326 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 DONSONQ9NYP3 566 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 LHX3Q9UBR4 397 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 PILRBQ9UKJ0 227 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 FZD4Q9ULV1 537 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 DUSP10Q9Y6W6 482 aa9.98□□□□□ -0.81
CLK3-220ENST00000567992 ATXN2Q99700 1313 aaKnown RBP9.98□□□□□ -0.81
CLK3-220ENST00000567992 ANKRD36A6QL64 1941 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 ARHGAP42A6NI28 874 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 BTNL10A8MVZ5 291 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 PATE3B3GLJ2 98 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 DFFAO00273 331 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 BUB1O43683 1085 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 BNIP3LO60238 219 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 LEFTY1O75610 366 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 RNASEH2AO75792 299 aaKnown RBP9.97□□□□□ -0.81
CLK3-220ENST00000567992 SEMA4FO95754 770 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 IGHV4-34P06331 123 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 GKP32189 559 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 SLC1A1P43005 524 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 MARCKSL1P49006 195 aa9.97□□□□□ -0.81
CLK3-220ENST00000567992 ADPRHP54922 357 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms