RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SETD3Q86TU7 594 aaPredicted RBP17.24■□□□□ 0.35
CLN3-211ENST00000564091 DCBLD1Q8N8Z6 715 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 TMEM35BQ8NCS4 154 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 OR4C6Q8NH72 309 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 C1orf74Q96LT6 269 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 PRORYQ9H606 182 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 IL36AQ9UHA7 158 aa17.24■□□□□ 0.35
CLN3-211ENST00000564091 ZNF821O75541 412 aaPredicted RBP17.23■□□□□ 0.35
CLN3-211ENST00000564091 LEFTY1O75610 366 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 F9P00740 461 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 PRB1P04280 392 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 GIMD1P0DJR0 217 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 HNRNPA2B1P22626 353 aaKnown RBP17.23■□□□□ 0.35
CLN3-211ENST00000564091 FLT3P36888 993 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 DNA2P51530 1060 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 CLCN6P51797 869 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 E2F1Q01094 437 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 RAPGEF1Q13905 1077 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 SLC25A52Q3SY17 297 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 HS1BP3Q53T59 392 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 FAM102AQ5T9C2 384 aaPredicted RBP17.23■□□□□ 0.35
CLN3-211ENST00000564091 TAF3Q5VWG9 929 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 DPY19L2P1Q6NXN4 242 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 GCNT7Q6ZNI0 430 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 XYLT1Q86Y38 959 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 SLC22A18ASQ8N1D0 253 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 CACTIN-AS1Q8N1I8 211 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 FGF11Q92914 225 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 C18orf8Q96DM3 657 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 PGAP3Q96FM1 320 aaPredicted RBP17.23■□□□□ 0.35
CLN3-211ENST00000564091 HDAC8Q9BY41 377 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 PCDHB1Q9Y5F3 818 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 GTF3C3Q9Y5Q9 886 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 WASF2Q9Y6W5 498 aa17.23■□□□□ 0.35
CLN3-211ENST00000564091 IGLV3-10A0A075B6K4 115 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 GOLGA8SH3BPF8 625 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 ZMPSTE24O75844 475 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 PIAS2O75928 621 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 CYP11B1P15538 503 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 CDH5P33151 784 aaPredicted RBP17.22■□□□□ 0.35
CLN3-211ENST00000564091 RECQLP46063 649 aaPredicted RBP17.22■□□□□ 0.35
CLN3-211ENST00000564091 GABRB2P47870 512 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 BPIFB4P59827 614 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 MAPK8IP2Q13387 824 aaPredicted RBP17.22■□□□□ 0.35
CLN3-211ENST00000564091 FGL2Q14314 439 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 DRAP1Q14919 205 aaPredicted RBP17.22■□□□□ 0.35
CLN3-211ENST00000564091 MAN2A1Q16706 1144 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 TPD52L1Q16890 204 aaPredicted RBP17.22■□□□□ 0.35
CLN3-211ENST00000564091 HSP90AA4PQ58FG1 418 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 TRNP1Q6NT89 227 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 Q6ZSR6 202 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 ABI3BPQ7Z7G0 1075 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 ERICH1Q86X53 443 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 SNIP1Q8TAD8 396 aaKnown RBP17.22■□□□□ 0.35
CLN3-211ENST00000564091 BMFQ96LC9 184 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 UBL7Q96S82 380 aaPredicted RBP17.22■□□□□ 0.35
CLN3-211ENST00000564091 PAXBP1Q9Y5B6 917 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 ACTL7AQ9Y615 435 aa17.22■□□□□ 0.35
CLN3-211ENST00000564091 COL5A1P20908 1838 aaPredicted RBP17.21■□□□□ 0.35
CLN3-211ENST00000564091 ARID1BQ8NFD5 2236 aaPredicted RBP17.21■□□□□ 0.35
CLN3-211ENST00000564091 GCN1Q92616 2671 aaKnown RBP17.21■□□□□ 0.35
CLN3-211ENST00000564091 ILVBLA1L0T0 632 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 RAD51BO15315 384 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 PAK4O96013 591 aaPredicted RBP17.21■□□□□ 0.35
CLN3-211ENST00000564091 PRKCSHP14314 528 aaPredicted RBP17.21■□□□□ 0.35
CLN3-211ENST00000564091 ARF5P84085 180 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 CCDC173Q0VFZ6 552 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 TMEM259Q4ZIN3 620 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 VWA3BQ502W6 1294 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 RETSATQ6NUM9 610 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 PTAR1Q7Z6K3 402 aaPredicted RBP17.21■□□□□ 0.35
CLN3-211ENST00000564091 FAM131BQ86XD5 332 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 MLKLQ8NB16 471 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 BAP1Q92560 729 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 CFAP57Q96MR6 1250 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 NDST4Q9H3R1 872 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 ATP13A1Q9HD20 1204 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 DNAJC28Q9NX36 388 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 ZNF212Q9UDV6 495 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 FCF1Q9Y324 198 aaKnown RBP17.21■□□□□ 0.35
CLN3-211ENST00000564091 FHOD1Q9Y613 1164 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 KALRNO60229 2985 aa17.21■□□□□ 0.35
CLN3-211ENST00000564091 POM121BA6NF01 834 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 NEBLO76041 1014 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 CKMT1AP12532 417 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 ACTN2P35609 894 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 SCNN1AP37088 669 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 SERPINH1P50454 418 aaKnown RBP17.2■□□□□ 0.34
CLN3-211ENST00000564091 NEK3P51956 506 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 TBC1D25Q3MII6 688 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 CARD16Q5EG05 197 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 MIIPQ5JXC2 388 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 SMYD5Q6GMV2 418 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 DRC7Q8IY82 874 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 CPA5Q8WXQ8 436 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 SLC39A7Q92504 469 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 PPP1R16AQ96I34 528 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 APOLD1Q96LR9 279 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 FCRL3Q96P31 734 aaPredicted RBP17.2■□□□□ 0.34
CLN3-211ENST00000564091 HAPLN3Q96S86 360 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms