RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 DNAH12Q6ZR08 3092 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 TNFAIP8O95379 198 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 CTBP1Q13363 440 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 IL23RQ5VWK5 629 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 ZYG11AQ6WRX3 759 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 B3GNT6Q6ZMB0 384 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 GK5Q6ZS86 529 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 NT5DC4Q86YG4 428 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 PGAM4Q8N0Y7 254 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 CDHR5Q9HBB8 845 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 CASS4Q9NQ75 786 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 PTTG2Q9NZH5 202 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 RBPJLQ9UBG7 517 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 XPR1Q9UBH6 696 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 RECQL4O94761 1208 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 VAPBO95292 243 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 HDCP19113 662 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 ACADSBP45954 432 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 BAG6P46379 1132 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 PAFAH1B3Q15102 231 aaKnown RBP13.41□□□□□ -0.26
CLN3-210ENST00000563874 TBC1D25Q3MII6 688 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 RPS27LQ71UM5 84 aaKnown RBP13.41□□□□□ -0.26
CLN3-210ENST00000563874 CATSPER4Q7RTX7 472 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 TICAM1Q8IUC6 712 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 DENND6AQ8IWF6 608 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 KLHL23Q8NBE8 558 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 LENG1Q96BZ8 264 aaPredicted RBP13.41□□□□□ -0.26
CLN3-210ENST00000563874 CELF6Q96J87 481 aaKnown RBP13.41□□□□□ -0.26
CLN3-210ENST00000563874 TSNARE1Q96NA8 513 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 C1QTNF1Q9BXJ1 281 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 ZBTB26Q9HCK0 441 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 NDUFA13Q9P0J0 144 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 KCNU1A8MYU2 1149 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 DLX3O60479 287 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 FAM58BPP0C7Q3 252 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 SLC35E2BP0CK96 405 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 HNRNPLP14866 589 aaKnown RBP eCLIP13.41□□□□□ -0.26
CLN3-210ENST00000563874 GABRB3P28472 473 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 TPI1P60174 286 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 RPL26P61254 145 aaKnown RBP13.41□□□□□ -0.26
CLN3-210ENST00000563874 PRKAA1Q13131 559 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 PTK2BQ14289 1009 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 ANO4Q32M45 955 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 ZC3HC1Q86WB0 502 aaKnown RBP13.41□□□□□ -0.26
CLN3-210ENST00000563874 CENPLQ8N0S6 344 aaPredicted RBP13.41□□□□□ -0.26
CLN3-210ENST00000563874 CRYBG2Q8N1P7 616 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 EME1Q96AY2 570 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 HSFY1Q96LI6 401 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 FTHL17Q9BXU8 183 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 SENP6Q9GZR1 1112 aaPredicted RBP13.41□□□□□ -0.26
CLN3-210ENST00000563874 EPB41L1Q9H4G0 881 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 EFCAB1Q9HAE3 211 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 HSFX1Q9UBD0 423 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 ZNF232Q9UNY5 417 aa13.41□□□□□ -0.26
CLN3-210ENST00000563874 TCAF2A6NFQ2 919 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 NEMP2A6NFY4 417 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 H3BSA7 217 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 NRP1O14786 923 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 JCHAINP01591 159 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 CYP2B6P20813 491 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 IGFBP6P24592 240 aaPredicted RBP13.4□□□□□ -0.26
CLN3-210ENST00000563874 MPP1Q00013 466 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 RALGDSQ12967 914 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 ZBTB6Q15916 424 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 DGKDQ16760 1214 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 ZNF280DQ6N043 979 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 ZFP1Q6P2D0 407 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 OTOP3Q7RTS5 596 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 TRIM74Q86UV6 250 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 TRIM73Q86UV7 250 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 LRRC52Q8N7C0 313 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 ADCY4Q8NFM4 1077 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 NXNL1Q96CM4 212 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 NPY6RQ99463 290 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 FAM124BQ9H5Z6 455 aaPredicted RBP13.4□□□□□ -0.26
CLN3-210ENST00000563874 LRRC4Q9HBW1 653 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 CSADQ9Y600 493 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 LOC285556D6RIA3 1793 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 DNAJC25-GNG10A0A024R161 153 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 PRSS51A0A1B0GVH4 220 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 BCAS2O75934 225 aaPredicted RBP13.4□□□□□ -0.26
CLN3-210ENST00000563874 AHSGP02765 367 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 NOS2P35228 1153 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 NSUN2Q08J23 767 aaKnown RBP eCLIP13.4□□□□□ -0.26
CLN3-210ENST00000563874 SH2D4BQ5SQS7 431 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 KCTD11Q693B1 232 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 MOB2Q70IA6 237 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 ARMCX2Q7L311 632 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 KDELC2Q7Z4H8 507 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 CEP97Q8IW35 865 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 SIX6OS1Q8N1H7 587 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 APPL2Q8NEU8 664 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 SPATA22Q8NHS9 363 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 GRIN3AQ8TCU5 1115 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 MRPS26Q9BYN8 205 aaKnown RBP13.4□□□□□ -0.26
CLN3-210ENST00000563874 RBM38Q9H0Z9 239 aaKnown RBP13.4□□□□□ -0.26
CLN3-210ENST00000563874 ZNF385DQ9H6B1 395 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 RMI1Q9H9A7 625 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 GTSE1Q9NYZ3 720 aa13.4□□□□□ -0.26
CLN3-210ENST00000563874 H3BRB1 525 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 603.1 ms